Mercurial > repos > brinkmanlab > awkscript

comparison awkscript.xml @ 5:df0c8f33c8ea draft default tip

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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/awkscript commit f32c764cdd6103703c660664266d847a78b51575"
author brinkmanlab
date Mon, 07 Dec 2020 21:25:48 +0000
parents 7966a43dbc9e
children
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4:7966a43dbc9e 5:df0c8f33c8ea
1 <tool id="awkscript" name="AWK Script" version="1.0" profile="16.04"> 1 <tool id="awkscript" name="AWK Script" version="1.1" profile="16.04">
2 <description>Transform, modify, or generate data</description> 2 <description>Transform, modify, or generate data</description>
3 <edam_topics> 3 <edam_topics>
4 <edam_topic>topic_0769</edam_topic> 4 <edam_topic>topic_0769</edam_topic>
5 </edam_topics> 5 </edam_topics>
6 <edam_operations> 6 <edam_operations>
33 ## tool_input_id='$inputs.element_identifier' FIXME collections dont expose their label to tools. 33 ## tool_input_id='$inputs.element_identifier' FIXME collections dont expose their label to tools.
34 #else 34 #else
35 #set $inputs = [$group.input_type_selection.infile] 35 #set $inputs = [$group.input_type_selection.infile]
36 #end if 36 #end if
37 #for file in $inputs 37 #for file in $inputs
38 #if $file
38 tool_input_id='$file.element_identifier' 39 tool_input_id='$file.element_identifier'
39 '$file' 40 '$file'
41 #end if
40 #end for 42 #end for
41 #end for 43 #end for
42 > '$outfile' 44 > '$outfile'
43 ]]></command> 45 ]]></command>
44 <configfiles> 46 <configfiles>
47 <inputs> 49 <inputs>
48 <repeat name="infiles" title="Inputs"> 50 <repeat name="infiles" title="Inputs">
49 <conditional name="input_type_selection"> 51 <conditional name="input_type_selection">
50 <param name="multiple" type="boolean" checked="false" label="Accept multiple" /> 52 <param name="multiple" type="boolean" checked="false" label="Accept multiple" />
51 <when value="false"> 53 <when value="false">
52 <param name="infile" format="txt" type="data" label="Single file to process" help="A separate execution will occur for each provided file"/> 54 <param name="infile" format="txt" type="data" optional="true" label="Single file to process" help="A separate execution will occur for each provided file"/>
53 </when> 55 </when>
54 <when value="true"> 56 <when value="true">
55 <param name="infile" format="txt" type="data" multiple="true" label="File or collection to process" /> 57 <param name="infile" format="txt" type="data" multiple="true" optional="true" label="File or collection to process" />
56 </when> 58 </when>
57 </conditional> 59 </conditional>
58 </repeat> 60 </repeat>
59 <param name="code" type="text" area="true" size="5x35" label="AWK Program" help=""> 61 <param name="code" type="text" area="true" size="5x35" label="AWK Program" help="">
60 <sanitizer sanitize="false" /> 62 <sanitizer sanitize="false" />