Mercurial > repos > brinkmanlab > biopython_convert

diff biopython-convert.xml @ 5:1c71c770bfd4 draft default tip

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planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/biopython-convert commit cae3bd2f937dee563791707ffb4aab8fe5b7e13b
author brinkmanlab
date Wed, 27 Jul 2022 19:49:20 +0000
parents d9ae46bb9f09
children
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--- a/biopython-convert.xml	Thu Feb 04 01:30:20 2021 +0000
+++ b/biopython-convert.xml	Wed Jul 27 19:49:20 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="biopython-convert" name="BioPython SeqIO Converter" version="1.0" profile="16.04">
+<tool id="biopython-convert" name="BioPython SeqIO Converter" version="1.1" profile="16.04">
     <description>Interconvert between the various sequence file formats that BioPython supports</description>
     <edam_topics>
         <edam_topic>topic_0091</edam_topic>
@@ -11,7 +11,7 @@
         <edam_operation>operation_3695</edam_operation>
     </edam_operations>
     <requirements>
-        <requirement type="package" version="1.0.4">biopython.convert</requirement>
+        <requirement type="package" version="1.3.3">biopython.convert</requirement>
     </requirements>
     <version_command><![CDATA[ biopython.convert -v ]]></version_command>
     <command detect_errors="aggressive"><![CDATA[
@@ -62,6 +62,9 @@
             <option value="tab">tab</option>
             <option value="qual">qual</option>
             <option value="gff3">gff3</option>
+            <option value="yaml">yaml</option>
+            <option value="json">json</option>
+            <option value="text">text</option>
         </param>
         <param name="split" type="boolean" truevalue="-s" falsevalue="" checked="false" label="Split each record into a different file" />
         <param name="info" type="boolean" truevalue="-i" falsevalue="" checked="false" label="Output record information while converting" />
@@ -102,6 +105,9 @@
                 <when input="output_type" value="tab" format="tabular" />
                 <when input="output_type" value="qual" format="qual" />
                 <when input="output_type" value="gff3" format="gff3" />
+                <when input="output_type" value="yaml" format="yaml" />
+                <when input="output_type" value="json" format="json" />
+                <when input="output_type" value="text" format="txt" />
             </change_format>
         </data>
         <collection name="split_output" type="list" label="Output split per record from ${tool.name} on ${on_string}">