Mercurial > repos > brinkmanlab > cheetah
comparison cheetah.xml @ 0:a3bb4353fb00 draft default tip
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/cheetah commit e773feeb6feb9d533eef40ae5cead068e46f596e"
author | brinkmanlab |
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date | Tue, 28 Jan 2020 15:33:51 -0500 |
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1 <tool id="cheetah" name="Cheetah" version="1.0" profile="16.04"> | |
2 <description>Generate reports using Galaxies built in Cheetah template engine and include information about datasets</description> | |
3 <command><![CDATA[ | |
4 mv $body $outfile | |
5 ]]></command> | |
6 <configfiles> | |
7 <configfile name="body"><![CDATA[ | |
8 #set $template_path = '/'.join([$__tool_data_path__, "cheetah", $template]) | |
9 #import os | |
10 #if '..' not in $template and $os.path.isfile($template_path) | |
11 #include $template_path | |
12 #else | |
13 <html> | |
14 <body> | |
15 $data.name is now complete. | |
16 #if $hasattr(__app__.config, "public_url") | |
17 You can view it <a href="${__app__.config.public_url}/datasets/${data.dataset.id}/display">here</a>. | |
18 #end if | |
19 </body> | |
20 </html> | |
21 #end if | |
22 ]]></configfile> | |
23 </configfiles> | |
24 <inputs> | |
25 <param name="data" type="data" format="data" multiple="true" label="Data" /> | |
26 <repeat name="extras" title="Extras"> | |
27 <param name="extra" type="text" label="Extra data to make available in the template body" /> | |
28 </repeat> | |
29 <param name="template" type="text" value="template.html" label="Template" help="Relative path of template to use in tool-data/cheetah/" /> | |
30 </inputs> | |
31 <outputs> | |
32 <data name="outfile" format="txt" /> | |
33 </outputs> | |
34 <help><![CDATA[ | |
35 Generate reports using Galaxies built in Cheetah template engine and include information about datasets | |
36 | |
37 Templates are parsed using Galaxies Cheeta Template Engine. The variables available are everything that is available to a tool including: | |
38 - $data Dataset instance passed to the tool input | |
39 - $extras[].extra List of extras specified in the tool parameters | |
40 - $template Relative path to the current template | |
41 | |
42 See this tools xml for an example template. | |
43 ]]></help> | |
44 <citations> | |
45 <citation type="doi">10.5281/zenodo.3364789</citation> | |
46 </citations> | |
47 </tool> |