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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/cheetah commit e773feeb6feb9d533eef40ae5cead068e46f596e"
author brinkmanlab
date Tue, 28 Jan 2020 15:33:51 -0500
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<tool id="cheetah" name="Cheetah" version="1.0" profile="16.04">
    <description>Generate reports using Galaxies built in Cheetah template engine and include information about datasets</description>
    <command><![CDATA[
        mv $body $outfile
    ]]></command>
    <configfiles>
        <configfile name="body"><![CDATA[
            #set $template_path = '/'.join([$__tool_data_path__, "cheetah", $template])
            #import os
            #if '..' not in $template and $os.path.isfile($template_path)
                #include $template_path
            #else
                <html>
                    <body>
                        $data.name is now complete.
                        #if $hasattr(__app__.config, "public_url")
                        You can view it <a href="${__app__.config.public_url}/datasets/${data.dataset.id}/display">here</a>.
                        #end if
                    </body>
                </html>
            #end if
        ]]></configfile>
    </configfiles>
    <inputs>
        <param name="data" type="data" format="data" multiple="true" label="Data" />
        <repeat name="extras" title="Extras">
            <param name="extra" type="text" label="Extra data to make available in the template body" />
        </repeat>
        <param name="template" type="text" value="template.html" label="Template" help="Relative path of template to use in tool-data/cheetah/" />
    </inputs>
    <outputs>
        <data name="outfile" format="txt" />
    </outputs>
    <help><![CDATA[
        Generate reports using Galaxies built in Cheetah template engine and include information about datasets
        
        Templates are parsed using Galaxies Cheeta Template Engine. The variables available are everything that is available to a tool including:
        - $data     Dataset instance passed to the tool input
        - $extras[].extra   List of extras specified in the tool parameters
        - $template Relative path to the current template
        
        See this tools xml for an example template.
    ]]></help>
    <citations>
        <citation type="doi">10.5281/zenodo.3364789</citation>
    </citations>
</tool>