# HG changeset patch
# User brinkmanlab
# Date 1592261307 14400
# Node ID 061c3402a9772e642155079cfb15a96f0f2fb608
# Parent  a3a09dd8d09aba3da66bd0cfe28a6b8293cec5d0
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/make_unique_id commit b661895b5e2dff7235eb32476602c3b93411a42e"

diff -r a3a09dd8d09a -r 061c3402a977 make_unique_id.py
--- a/make_unique_id.py	Fri Jan 24 17:38:28 2020 -0500
+++ b/make_unique_id.py	Mon Jun 15 18:48:27 2020 -0400
@@ -29,20 +29,22 @@
     ids = defaultdict(int)
     
     def makeUnique(seq):
-        count = ids[seq.id]
-        ids[seq.id] += 1
+        newid = seq.id[:28] # Genbank has a max length for the id and sequence length number, truncate the sequence id if too long
+        count = ids[newid]
+        ids[newid] += 1
         if count:
             suffix = "_" + str(count)
-            newid = seq.id
             seqlenlen = len(str(len(seq)))
             if len(newid) + len(suffix) + 1 + seqlenlen > 28:
-                # Genbank has a max length for the id and sequence length number, truncate the sequence id if too long
                newid = newid[:27 - seqlenlen - len(suffix)]
 
-            print(f"{seq.id}\t{newid}{suffix}")
-            seq.id = newid + suffix
+            newid += suffix
             seq.name += suffix
 
+        if seq.id != newid:
+            print(f"{seq.id}\t{newid}")
+
+        seq.id = newid
         return seq