Mercurial > repos > brinkmanlab > mauve_contig_mover

comparison mauve_contig_mover.xml @ 6:4931255f2fcc draft

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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 25b7aeca541e258a2bff5d0e34e9298996b4a47b"
author brinkmanlab
date Fri, 20 Nov 2020 18:58:52 +0000
parents f8b09693c9c1
children 4c4838703fa8
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5:f8b09693c9c1 6:4931255f2fcc
42 #set $draft_path = $os.path.basename(str($draft)) + ".gbk" 42 #set $draft_path = $os.path.basename(str($draft)) + ".gbk"
43 #else 43 #else
44 #set $draft_path = str($draft) 44 #set $draft_path = str($draft)
45 #end if 45 #end if
46 46
47 MauveCM -output output -ref $ref -draft $draft_path && $__tool_directory__/mcm_final.sh 47 test -r $ref && MauveCM -output output -ref $ref -draft $draft_path && $__tool_directory__/mcm_final.sh
48 ]]></command> 48 ]]></command>
49 <inputs> 49 <inputs>
50 <param name="draft" type="data" format="genbank,fasta" label="Draft" /> 50 <param name="draft" type="data" format="genbank,fasta" label="Draft" />
51 <conditional name="ref_select"> 51 <conditional name="ref_select">
52 <param name="ref_source" type="select" label="Select the source of the reference to align the draft to"> 52 <param name="ref_source" type="select" label="Select the source of the reference to align the draft to">