Mercurial > repos > brinkmanlab > mauve_contig_mover

diff mcm_final.sh @ 0:c14690ec0c9f draft

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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit 33b02e08cbc8f76fb4b8537f8c968393f85a1b5e"
author brinkmanlab
date Fri, 24 Jan 2020 17:43:19 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mcm_final.sh	Fri Jan 24 17:43:19 2020 -0500
@@ -0,0 +1,11 @@
+#!/usr/bin/env bash
+ln -sf output/`ls -1 output | tail -n1` final
+mv "`ls -1 final/*.backbone | tail -n1`" final.backbone
+mv "`ls -1 final/*_contigs.tab | tail -n1`" final.contigs.tab
+mv "`ls -1 final/*.fas | tail -n1`" final.reordered
+
+FEATURES="`ls -1 final/*_features.tab 2>/dev/null | tail -n1`"
+if [[ -w ${FEATURES} ]]; then
+mv "${FEATURES}" final.features.tab
+fi
+