Mercurial > repos > brinkmanlab > mauve_contig_mover

view mcm_final.sh @ 3:38fbb67f0dac draft

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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/mauve_contig_mover commit e26f08ccc754d9bab560cdab7ea78203cc92ec9f"
author brinkmanlab
date Tue, 16 Jun 2020 13:30:24 -0400
parents c14690ec0c9f
children
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#!/usr/bin/env bash
ln -sf output/`ls -1 output | tail -n1` final
mv "`ls -1 final/*.backbone | tail -n1`" final.backbone
mv "`ls -1 final/*_contigs.tab | tail -n1`" final.contigs.tab
mv "`ls -1 final/*.fas | tail -n1`" final.reordered

FEATURES="`ls -1 final/*_features.tab 2>/dev/null | tail -n1`"
if [[ -w ${FEATURES} ]]; then
mv "${FEATURES}" final.features.tab
fi