Mercurial > repos > brinkmanlab > microbedb

comparison all_fasta.xml @ 3:7b432c6ff465 draft

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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/microbedb commit 2b1f9519ca843b0f269b19c9b81506640bb4aa36"
author brinkmanlab
date Fri, 06 Nov 2020 23:07:41 +0000
parents 258826db8291
children 69186a3c9e76
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2:258826db8291 3:7b432c6ff465
12 <requirement type="package" version="3">sqlite</requirement> 12 <requirement type="package" version="3">sqlite</requirement>
13 </requirements> 13 </requirements>
14 <version_command>sqlite3 --version</version_command> 14 <version_command>sqlite3 --version</version_command>
15 <command><![CDATA[ 15 <command><![CDATA[
16 #import os.path 16 #import os.path
17 sqlite3 -readonly $db '.param set :basepath ${os.path.dirname(str($db))}' '.read $__tool_directory__/all_fasta.sql' > '$output'; 17 sqlite3 -readonly $db '.param set :basepath ${os.path.dirname(str($db))}' '.read $__tool_directory__/all_fasta.sql' > '$output'
18 #if $builds 18 #if $builds
19 sqlite3 -readonly $db < '$builds_sql' 19 && sqlite3 -readonly $db < '$builds_sql'
20 #end if 20 #end if
21 ]]></command> 21 ]]></command>
22 <configfiles> 22 <configfiles>
23 <configfile name="builds_sql"><![CDATA[ 23 <configfile name="builds_sql"><![CDATA[
24 #include $__tool_directory__+"/builds.sql" 24 #include $__tool_directory__+"/builds.sql"