Mercurial > repos > brinkmanlab > microbedb

comparison all_fasta.xml @ 10:2f6ef3a184df draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/microbedb commit 12aaf041d3d5a052c6a3f3aa7f3177591e3b19bf"
author brinkmanlab
date Sat, 16 Jan 2021 03:05:14 +0000
parents b08b09342b92
children
comparison
equal deleted inserted replaced
9:b08b09342b92 10:2f6ef3a184df
24 ,'__dbkeys__', json_group_array(json_object('value', dbkey, 'name', label, 'len_path', '')) 24 ,'__dbkeys__', json_group_array(json_object('value', dbkey, 'name', label, 'len_path', ''))
25 #end if 25 #end if
26 )) FROM ( 26 )) FROM (
27 SELECT (r.rep_accnum || '.' || r.rep_version) AS unique_build_id, 27 SELECT (r.rep_accnum || '.' || r.rep_version) AS unique_build_id,
28 (r.rep_accnum || '_' || r.rep_version) AS dbkey, 28 (r.rep_accnum || '_' || r.rep_version) AS dbkey,
29 (REPLACE(r.definition, ', complete genome.', '') || ' [' || r.rep_accnum || '.' || r.rep_version || ']') AS label, 29 (REPLACE(REPLACE(r.definition, ', complete sequence.', ''), ', complete genome.', '') || ' [' || r.rep_accnum || '.' || r.rep_version || ']') AS label,
30 ('${os.path.dirname(str($db))}/' || genomeproject.gpv_directory || '/' || genomeproject.filename || '_genomic.fna') AS file_path 30 ('${os.path.dirname(str($db))}/' || genomeproject.gpv_directory || '/' || r.file_name || '.fna') AS file_path
31 FROM genomeproject JOIN replicon r ON genomeproject.gpv_id = r.gpv_id AND r.rep_type = 'chromosome' 31 FROM genomeproject JOIN replicon r ON genomeproject.gpv_id = r.gpv_id AND r.rep_type = 'chromosome'
32 WHERE genomeproject.file_types IS NOT NULL 32 WHERE r.file_types IS NOT NULL
33 AND genomeproject.file_types LIKE '%.fna%' 33 AND r.file_types LIKE '%.fna%'
34 AND r.rep_type = 'chromosome' 34 AND r.rep_type = 'chromosome'
35 ) 35 )
36 ]]></configfile> 36 ]]></configfile>
37 </configfiles> 37 </configfiles>
38 <inputs> 38 <inputs>