Mercurial > repos > brinkmanlab > microbedb
diff builds.sql @ 0:40d14d5c8125 draft
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/microbedb commit e63162a36457c0337c67e536a8a394beb06f4d70"
author | brinkmanlab |
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date | Fri, 30 Oct 2020 21:04:47 +0000 |
parents | |
children | 258826db8291 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/builds.sql Fri Oct 30 21:04:47 2020 +0000 @@ -0,0 +1,19 @@ +DROP TABLE IF EXISTS builds_temp; +CREATE TEMP TABLE builds_temp(dbkey unique, label); +.mode csv +.separator ' ' +.import $__app__.config.builds_file_path builds_temp +INSERT OR REPLACE INTO builds_temp (dbkey, label) +SELECT (r.rep_accnum || '_' || r.rep_version) AS dbkey, + (REPLACE(r.definition, ', complete genome.', '') || ' [' || r.rep_accnum || '.' || r.rep_version || + ']') AS label +FROM genomeproject + JOIN replicon r ON genomeproject.gpv_id = r.gpv_id AND r.rep_type = 'chromosome' +WHERE genomeproject.version_id = (SELECT MAX(version_id) FROM version) + AND genomeproject.file_types IS NOT NULL + AND genomeproject.file_types LIKE '%.fna%' + AND r.rep_type = 'chromosome'; +.mode list +.separator ' ' +.once $__app__.config.builds_file_path +SELECT dbkey, label FROM builds_temp ORDER BY dbkey; \ No newline at end of file