Mercurial > repos > brinkmanlab > microbedb

diff all_fasta.xml @ 3:7b432c6ff465 draft

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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/microbedb commit 2b1f9519ca843b0f269b19c9b81506640bb4aa36"
author brinkmanlab
date Fri, 06 Nov 2020 23:07:41 +0000
parents 258826db8291
children 69186a3c9e76
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--- a/all_fasta.xml	Fri Nov 06 21:26:52 2020 +0000
+++ b/all_fasta.xml	Fri Nov 06 23:07:41 2020 +0000
@@ -14,9 +14,9 @@
     <version_command>sqlite3 --version</version_command>
     <command><![CDATA[
         #import os.path
-        sqlite3 -readonly $db '.param set :basepath ${os.path.dirname(str($db))}' '.read $__tool_directory__/all_fasta.sql' > '$output';
+        sqlite3 -readonly $db '.param set :basepath ${os.path.dirname(str($db))}' '.read $__tool_directory__/all_fasta.sql' > '$output'
         #if $builds
-        sqlite3 -readonly $db < '$builds_sql'
+        && sqlite3 -readonly $db < '$builds_sql'
         #end if
     ]]></command>
     <configfiles>