Mercurial > repos > brinkmanlab > microbedb

diff all_fasta.xml @ 8:7c2f036e13a7 draft

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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/microbedb commit 93c3e4d7bc06fd1595bc005081e89248561de56a"
author brinkmanlab
date Tue, 10 Nov 2020 00:15:03 +0000
parents 6ad04790da12
children b08b09342b92
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line diff
--- a/all_fasta.xml	Mon Nov 09 23:15:23 2020 +0000
+++ b/all_fasta.xml	Tue Nov 10 00:15:03 2020 +0000
@@ -18,12 +18,12 @@
     <configfiles>
         <configfile name="sql"><![CDATA[
             #import os.path
-            SELECT json_object('data_tables',
-                json_object('all_fasta', json_group_array(json_object('value', unique_build_id, 'dbkey', dbkey, 'name', label, 'path', file_path))),
+            SELECT json_object('data_tables', json_object(
+                'all_fasta', json_group_array(json_object('value', unique_build_id, 'dbkey', dbkey, 'name', label, 'path', file_path))
             #if $builds
-                json_object('__dbkeys__', json_group_array(json_object('value', dbkey, 'name', label, 'len_path', ''))),
+                ,'__dbkeys__', json_group_array(json_object('value', dbkey, 'name', label, 'len_path', ''))
             #end if
-            ) FROM (
+            )) FROM (
              SELECT (r.rep_accnum || '.' || r.rep_version) AS unique_build_id,
                     (r.rep_accnum || '_' || r.rep_version) AS dbkey,
                     (REPLACE(r.definition, ', complete genome.', '') || ' [' || r.rep_accnum || '.' || r.rep_version || ']') AS label,