Mercurial > repos > brinkmanlab > parsnp

comparison ParSNP.xml @ 2:22bf5b566ce2 draft

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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/parsnp commit a1f5a7f37fe4e85f7aca1a1476ab30468e1d1578"
author brinkmanlab
date Fri, 13 Mar 2020 14:39:56 -0400
parents 2e855db9b19b
children 2aeddc0a7b0e
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1:2e855db9b19b 2:22bf5b566ce2
12 <requirements> 12 <requirements>
13 <requirement type="package" version="1.2">parsnp</requirement> 13 <requirement type="package" version="1.2">parsnp</requirement>
14 </requirements> 14 </requirements>
15 <version_command><![CDATA[parsnp -V |& tail -n1]]></version_command> 15 <version_command><![CDATA[parsnp -V |& tail -n1]]></version_command>
16 <command detect_errors="aggressive"><![CDATA[ 16 <command detect_errors="aggressive"><![CDATA[
17 export MEMORY_LIMIT=`expr ${GALAXY_MEMORY_MB:-0} \* 1000`; 17 export MEMORY_LIMIT=`expr \${GALAXY_MEMORY_MB:-0} \\* 1000`;
18 [[ $MEMORY_LIMIT -eq 0 ]] && export MEMORY_LIMIT=; 18 [[ \$MEMORY_LIMIT -eq 0 ]] && export MEMORY_LIMIT=;
19 export GENOME_DIR=\$(mktemp -d -p `pwd`) 19 export GENOME_DIR=\$(mktemp -d -p `pwd`)
20 #for $genome in $genomes 20 #for $genome in $genomes
21 && ln -sf '$genome' 21 && ln -sf '$genome'
22 #if $adv.use_ids 22 #if $adv.use_ids
23 \$GENOME_DIR/'$genome.element_identifier' 23 \$GENOME_DIR/'$genome.element_identifier'