Mercurial > repos > bvalot > pymlst
comparison wgmlst_stats.xml @ 0:a3cc35af3635 draft
planemo upload for repository https://github.com/bvalot/pyMLST commit 13edfab02a5da9e374c38ecbd0e229ec0f8d53bb
| author | bvalot |
|---|---|
| date | Thu, 16 Jun 2022 12:32:28 +0000 |
| parents | |
| children | 5b2c48fa0175 |
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| -1:000000000000 | 0:a3cc35af3635 |
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| 1 <tool id="wgmlst_stats_wrapper" name="Statistic of cg/wgMLST database" version="2.1.3"> | |
| 2 <description></description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="2.1.3">pymlst</requirement> | |
| 5 </requirements> | |
| 6 <stdio> | |
| 7 <exit_code range="1:" level="fatal" /> | |
| 8 </stdio> | |
| 9 <version_command>wgMLST -v</version_command> | |
| 10 <command> | |
| 11 wgMLST stats '${database}' &> '${logfile}' | |
| 12 </command> | |
| 13 <inputs> | |
| 14 <param name="database" type="data" | |
| 15 format="sqlite" | |
| 16 label="cg/wgMLST database" | |
| 17 help="Sqlite format from cg/wgMLST database" /> | |
| 18 </inputs> | |
| 19 <outputs> | |
| 20 <data name="logfile" format="txt" label="Statistics of ${database.name}: log" /> | |
| 21 </outputs> | |
| 22 <tests> | |
| 23 <test expect_num_outputs="1"> | |
| 24 <param name="database" value="wgmlst_ecoli.db" /> | |
| 25 <output name="logfile" ftype="txt" file="wgmlst_ecoli.db.stats" /> | |
| 26 </test> | |
| 27 </tests> | |
| 28 <help> | |
| 29 **What it does** | |
| 30 | |
| 31 Extract stats from a cg/wgMLST DATABASE | |
| 32 | |
| 33 **License and citation** | |
| 34 | |
| 35 This Galaxy tool is Copyright © 2022 `B. Valot` and is released under the `GPL3 license`. | |
| 36 </help> | |
| 37 <citations> | |
| 38 </citations> | |
| 39 </tool> |