Mercurial > repos > bvalot > pymlst
diff wgmlst_stats.xml @ 0:a3cc35af3635 draft
planemo upload for repository https://github.com/bvalot/pyMLST commit 13edfab02a5da9e374c38ecbd0e229ec0f8d53bb
author | bvalot |
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date | Thu, 16 Jun 2022 12:32:28 +0000 |
parents | |
children | 5b2c48fa0175 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/wgmlst_stats.xml Thu Jun 16 12:32:28 2022 +0000 @@ -0,0 +1,39 @@ +<tool id="wgmlst_stats_wrapper" name="Statistic of cg/wgMLST database" version="2.1.3"> + <description></description> + <requirements> + <requirement type="package" version="2.1.3">pymlst</requirement> + </requirements> + <stdio> + <exit_code range="1:" level="fatal" /> + </stdio> + <version_command>wgMLST -v</version_command> + <command> + wgMLST stats '${database}' &> '${logfile}' + </command> + <inputs> + <param name="database" type="data" + format="sqlite" + label="cg/wgMLST database" + help="Sqlite format from cg/wgMLST database" /> + </inputs> + <outputs> + <data name="logfile" format="txt" label="Statistics of ${database.name}: log" /> + </outputs> + <tests> + <test expect_num_outputs="1"> + <param name="database" value="wgmlst_ecoli.db" /> + <output name="logfile" ftype="txt" file="wgmlst_ecoli.db.stats" /> + </test> + </tests> + <help> +**What it does** + +Extract stats from a cg/wgMLST DATABASE + +**License and citation** + +This Galaxy tool is Copyright © 2022 `B. Valot` and is released under the `GPL3 license`. + </help> + <citations> + </citations> +</tool>