diff wgmlst_stats.xml @ 0:a3cc35af3635 draft

planemo upload for repository https://github.com/bvalot/pyMLST commit 13edfab02a5da9e374c38ecbd0e229ec0f8d53bb
author bvalot
date Thu, 16 Jun 2022 12:32:28 +0000
parents
children 5b2c48fa0175
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/wgmlst_stats.xml	Thu Jun 16 12:32:28 2022 +0000
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+<tool id="wgmlst_stats_wrapper" name="Statistic of cg/wgMLST database" version="2.1.3">
+  <description></description>
+  <requirements>
+	<requirement type="package" version="2.1.3">pymlst</requirement>
+  </requirements>
+  <stdio>
+    <exit_code range="1:" level="fatal" />
+  </stdio>
+  <version_command>wgMLST -v</version_command>
+  <command>
+    wgMLST stats '${database}' &amp;> '${logfile}'
+  </command>
+  <inputs>
+	<param name="database" type="data"
+           format="sqlite"
+           label="cg/wgMLST database"
+           help="Sqlite format from cg/wgMLST database" />
+  </inputs>
+  <outputs>
+    <data name="logfile" format="txt" label="Statistics of ${database.name}: log" />
+  </outputs>
+  <tests>
+	<test expect_num_outputs="1">
+      <param name="database" value="wgmlst_ecoli.db" />
+      <output name="logfile" ftype="txt" file="wgmlst_ecoli.db.stats" />
+    </test>
+  </tests>
+  <help>
+**What it does**
+
+Extract stats from a cg/wgMLST DATABASE
+
+**License and citation**
+
+This Galaxy tool is Copyright © 2022 `B. Valot` and is released under the `GPL3 license`.
+  </help>
+  <citations>
+  </citations>
+</tool>