Mercurial > repos > bvalot > pymlst
view wgmlst_stats.xml @ 1:5b2c48fa0175 draft
planemo upload for repository https://github.com/bvalot/pyMLST commit fe04f6232a5f7ea78b666cb8036872902e79998b
author | bvalot |
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date | Wed, 07 Dec 2022 15:25:06 +0000 |
parents | a3cc35af3635 |
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<tool id="wgmlst_stats_wrapper" name="Statistic of cg/wgMLST database" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05"> <description></description> <macros> <import>macro.xml</import> </macros> <expand macro="requirements" /> <stdio> <exit_code range="1:" level="fatal" /> </stdio> <version_command>wgMLST -v</version_command> <command> wgMLST stats '${database}' &> '${logfile}' </command> <inputs> <param name="database" type="data" format="sqlite" label="cg/wgMLST database" help="Sqlite format from cg/wgMLST database" /> </inputs> <outputs> <data name="logfile" format="txt" label="Statistics of ${database.name}: log" /> </outputs> <tests> <test expect_num_outputs="1"> <param name="database" value="wgmlst_ecoli.db" /> <output name="logfile" ftype="txt" file="wgmlst_ecoli.db.stats" /> </test> </tests> <help> **What it does** Extract stats from a cg/wgMLST DATABASE **License and citation** This Galaxy tool is Copyright © 2022 `B. Valot` and is released under the `GPL3 license`. </help> <citations> </citations> </tool>