<tool id="wgmlst_stats_wrapper" name="Statistic of cg/wgMLST database" version="2.1.3">
  <description></description>
  <requirements>
	<requirement type="package" version="2.1.3">pymlst</requirement>
  </requirements>
  <stdio>
    <exit_code range="1:" level="fatal" />
  </stdio>
  <version_command>wgMLST -v</version_command>
  <command>
    wgMLST stats '${database}' &amp;> '${logfile}'
  </command>
  <inputs>
	<param name="database" type="data"
           format="sqlite"
           label="cg/wgMLST database"
           help="Sqlite format from cg/wgMLST database" />
  </inputs>
  <outputs>
    <data name="logfile" format="txt" label="Statistics of ${database.name}: log" />
  </outputs>
  <tests>
	<test expect_num_outputs="1">
      <param name="database" value="wgmlst_ecoli.db" />
      <output name="logfile" ftype="txt" file="wgmlst_ecoli.db.stats" />
    </test>
  </tests>
  <help>
**What it does**

Extract stats from a cg/wgMLST DATABASE

**License and citation**

This Galaxy tool is Copyright © 2022 `B. Valot` and is released under the `GPL3 license`.
  </help>
  <citations>
  </citations>
</tool>