--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mrfast-2.1.0.4/Makefile	Tue Feb 21 10:29:47 2012 -0500
@@ -0,0 +1,18 @@
+CC=gcc
+CFLAGS = -c -O3 -Wall
+LDFLAGS = -lz -lm 
+SOURCES = baseFAST.c CommandLineParser.c Common.c HashTable.c MrFAST.c Output.c Reads.c RefGenome.c 
+OBJECTS = $(SOURCES:.c=.o)
+EXECUTABLE = mrfast
+
+
+all: $(SOURCES) $(EXECUTABLE)
+	rm -rf *.o
+		
+$(EXECUTABLE): $(OBJECTS) 
+	$(CC) $(OBJECTS) -o $@ $(LDFLAGS) 
+
+.c.o:
+	$(CC) $(CFLAGS) $< -o $@ 
+clean:
+	rm -f *.o *~ #*