Mercurial > repos > calkan > mrsfast
comparison mrsfast-2.3.0.2/RefGenome.h @ 0:ec628ba33878 default tip
Uploaded source code for mrsFAST
author | calkan |
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date | Tue, 21 Feb 2012 10:39:28 -0500 |
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-1:000000000000 | 0:ec628ba33878 |
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1 /* | |
2 * Copyright (c) <2008 - 2009>, University of Washington, Simon Fraser University | |
3 * All rights reserved. | |
4 * | |
5 * Redistribution and use in source and binary forms, with or without modification, | |
6 * are permitted provided that the following conditions are met: | |
7 * | |
8 * Redistributions of source code must retain the above copyright notice, this list | |
9 * of conditions and the following disclaimer. | |
10 * - Redistributions in binary form must reproduce the above copyright notice, this | |
11 * list of conditions and the following disclaimer in the documentation and/or other | |
12 * materials provided with the distribution. | |
13 * - Neither the name of the <ORGANIZATION> nor the names of its contributors may be | |
14 * used to endorse or promote products derived from this software without specific | |
15 * prior written permission. | |
16 * | |
17 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS | |
18 * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT | |
19 * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR | |
20 * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR | |
21 * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, | |
22 * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, | |
23 * PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR | |
24 * PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF | |
25 * LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING | |
26 * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS | |
27 * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | |
28 */ | |
29 | |
30 /* | |
31 * Author : Faraz Hach | |
32 * Email : fhach AT cs DOT sfu | |
33 * Last Update : 2009-12-08 | |
34 */ | |
35 | |
36 | |
37 #ifndef _REF_GENOME_ | |
38 #define _REF_GENOME_ | |
39 | |
40 int initLoadingRefGenome(char *fileName); | |
41 void finalizeLoadingRefGenome(); | |
42 int loadRefGenome(char **refGen, char **refGenName, int *refGenOff); | |
43 | |
44 #endif |