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comparison rgi.xml @ 1:f96cbb663aa9 draft

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planemo upload for repository https://github.com/arpcard/rgi commit 09a75bd2d655c05892acf7585a7ed08548f1c86d
author card
date Fri, 28 Feb 2020 13:38:11 -0500
parents 715bc9aeef69
children a671367c326e
comparison
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0:715bc9aeef69 1:f96cbb663aa9
1 <tool id="rgi" name="Resistance Gene Identifier (RGI)" version="4.2.2"> 1 <tool id="rgi" name="Resistance Gene Identifier (RGI)" version="5.1.0">
2 <description>This tool predicts resistome(s) from protein or nucleotide data based on homology and SNP models.</description> 2 <description>This tool predicts resistome(s) from protein or nucleotide data based on homology and SNP models.</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="4.2.2">rgi</requirement> 4 <requirement type="package" version="5.1.0">rgi</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <exit_code range="1:" /> 7 <exit_code range="1:" />
8 </stdio> 8 </stdio>
9 <command><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 #if $db_opts.db_opts_selector != "default": 10 #if $db_opts.db_opts_selector != "default":
11 rgi load 11 rgi load
12 #if $db_opts.db_opts_selector == "local": 12 #if $db_opts.db_opts_selector == "local":
13 -i "${__tool_data_path__}/rgi_databases/$db_opts.rgi_db_local/card.json" 13 -i "${__tool_data_path__}/rgi_databases/$db_opts.rgi_db_local/card.json"
14 #else: 14 #else: