Mercurial > repos > cavelandiah > mirnature

annotate create_dataset.sh @ 0:4394f98e705e draft default tip

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"planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
author cavelandiah
date Sun, 27 Nov 2022 22:00:05 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
1 #!/usr/bin/env bash
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
2
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
3 input=$1
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
4
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
5 dir=$2
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
6 mkdir $dir/uncompress
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
7 cp $input $dir/uncompress/data.gz
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
8 Dir_name=`tar -tf $dir/uncompress/data.gz | head -1 | cut -f1 -d"/" | sort | uniq`
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
9 tar -xf $dir/uncompress/data.gz --directory $dir/uncompress/
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
10 mv $dir/uncompress/${Dir_name} $dir/uncompress/Dataset