# HG changeset patch
# User charles-bernard
# Date 1482071626 18000
# Node ID 1c9cea51dc24785caef75f202d6b24c8876a7114
# Parent  c8acc8808b529225dfebfff84806b3a9dbab20ad
Uploaded

diff -r c8acc8808b52 -r 1c9cea51dc24 ALFA/ALFA_wrapper.py
--- a/ALFA/ALFA_wrapper.py	Sat Nov 19 04:25:42 2016 -0500
+++ b/ALFA/ALFA_wrapper.py	Sun Dec 18 09:33:46 2016 -0500
@@ -55,7 +55,7 @@
     if n%2 != 0:
         exit_and_explain('Problem with pairing reads filename and reads label')
     input2_args='-i'
-    k = 1
+    k = 0
     reads_filenames = [''] * (n/2)
     reads_labels = [''] * (n/2)
     for i in range(0, n, 2):
@@ -86,7 +86,7 @@
     merged_count_file = open('count_file.txt', 'wb')
     for i in range(0, len(reads_labels)):
         current_count_file = open(reads_labels[i] + '.categories_counts', 'r')
-        merged_count_file.write('##LABEL: %s\n\n' % reads_label[i])
+        merged_count_file.write('##LABEL: %s\n\n' % reads_labels[i])
         merged_count_file.write(current_count_file.read())
         merged_count_file.write('__________________________________________________________________\n')
         current_count_file.close()