Mercurial > repos > charles-bernard > data_manager_build_alfa_indexes

changeset 3:4ada30780811 draft

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Uploaded
author charles-bernard
date Thu, 27 Oct 2016 05:45:31 -0400
parents ce87a4047955
children 6f0be85be8fb
files data_manager_build_alfa_indexes/data_manager/data_manager_build_alfa_indexes.xml
diffstat 1 files changed, 7 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_build_alfa_indexes/data_manager/data_manager_build_alfa_indexes.xml	Thu Oct 27 05:29:00 2016 -0400
+++ b/data_manager_build_alfa_indexes/data_manager/data_manager_build_alfa_indexes.xml	Thu Oct 27 05:45:31 2016 -0400
@@ -1,6 +1,12 @@
 <tool id="build_alfa_indexes" name="ALFA indexes" version="0.0.1" tool_type="manage_data">
   <description>build ALFA indexes from automatically downloaded gtf annotation file</description>
+
+  <requirements> 
+  	 <requirement type="package" version="0.1.0">alfa</requirement>
+  </requirements>
+
   <command interpreter="python">data_manager_build_alfa_indexes.py -e "${reference_source['kingdom']}" "${reference_source['species_name']}" -o "${out_file}" $__root_dir__ </command>
+
   <inputs>
     <conditional name="reference_source">
       <param name="reference_source_selector" type="select" label="Choose the source for the reference genome">
@@ -21,6 +27,7 @@
       </when>
     </conditional>
   </inputs>
+  
    <outputs>
       <data name="out_file" format="data_manager_json"/>
   </outputs>