Mercurial > repos > charles-bernard > data_manager_build_alfa_indexes

changeset 21:fbb5a2468fa8 draft

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Uploaded
author charles-bernard
date Mon, 31 Oct 2016 19:22:59 -0400
parents 58cb1f6c337d
children b9ebfd9461eb
files data_manager_build_alfa_indexes/data_manager/data_manager_build_alfa_indexes.py
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_build_alfa_indexes/data_manager/data_manager_build_alfa_indexes.py	Mon Oct 31 19:11:55 2016 -0400
+++ b/data_manager_build_alfa_indexes/data_manager/data_manager_build_alfa_indexes.py	Mon Oct 31 19:22:59 2016 -0400
@@ -104,11 +104,11 @@
         list_species = [''] * nb_lines
         for i in range(0, nb_lines):
             if kingdom == 'vertebrates':
-                fields = species_lines[0].split(' ')
+                fields = species_lines[i].split(' ')
                 columns = fields[-1].split('\r')
                 list_species[i] = columns[0]
             else:
-                columns = species_lines[0].split('\t')
+                columns = species_lines[i].split('\t')
                 list_species[i] = columns[1]
             exact_match = re.search('^%s$' % species_name, list_species[i])
             if exact_match:
@@ -236,4 +236,4 @@
     cleanup_before_exit(tmp_dir)
 
     open(output_filename, 'wb').write(to_json_string(data_manager_dict))
-main()
\ No newline at end of file
+main()