Mercurial > repos > cheanney > db2db
changeset 3:d4e959143115 draft
Uploaded
| author | cheanney |
|---|---|
| date | Tue, 07 Jul 2015 13:02:00 -0400 |
| parents | ae43e2d7f68a |
| children | 0895298631ea |
| files | db2db.xml |
| diffstat | 1 files changed, 42 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/db2db.xml Tue Jul 07 13:02:00 2015 -0400 @@ -0,0 +1,42 @@ +<tool id="db2db" name="db2db" version="1.0"> + <description></description> + <command interpreter="/usr/bin/php"> + /mnt/webrepo/fr-s-bsg-bio-d/htdocs/biodbnet_wrapper/db2dbRestClient.php input='$input' inputValues='$inputValues' outputs='$output' taxonId='$taxon' fileType='$filetype' > $result + </command> + <inputs> + <param name="input" type="text" size="30" label="Enter an input ID name" /> + <param name="inputValues" type="text" area="true" size="4x40" label="Paste input ID value(s)" /> + <param name="output" type="text" size="30" label="Enter an output ID name(s)" /> + <param name="taxon" size="30" type="text" label="Enter a taxon id (optional)" /> + <param name="filetype" type="select" label="fileType options"> + <option value="table">table</option> + <option value="xml">xml</option> + <option value="json">json</option> + </param> + </inputs> + + <outputs> + <data format="html" name="result" label="db2db.results"> + <change_format> + <when input="filetype" value=“xml” format=“xml” /> + <when input="filetype" value=“json” format=“json” /> + </change_format> + </data> + </outputs> + + + <help> + +.. class:: infomark + +**What it does** + +Add instructions here. + +----- + + +**Usage** +/mnt/webrepo/fr-s-bsg-bio-d/htdocs/biodbnet_wrapper/db2dbClient.php input='Ensembl Gene ID' inputValues='ENSG00000121410, ENSG00000171428' ouptput='Gene Symbol, Ensembl Protein ID' taxonId='9606'(optional) + </help> +</tool>