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author cheanney
date Thu, 16 Jul 2015 11:03:16 -0400
parents 5af6f6e0a0da
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<tool id="dbAnnot" name="dbAnnot" version="1.0">
    <description>Database Annotation (dbAnnot) allows for easy annotations of biological identifiers. </description>
    <command interpreter="/usr/bin/php">
        dbAnnotRestClient.php inputValues='$inputValues' annotations='$annotations' taxonId='$taxon' fileType='$filetype' > $result
    </command>
    <inputs>
        <param name="annotations" type="text" size="30" label="Enter annotation ID name(s)" />
        <param name="inputValues" type="text" area="true" size="4x40" label="Paste input ID value(s)" />										<param name="taxon" size="30" type="text" label="Enter a taxon id (optional)" />
        <param name="filetype" type="select" label="fileType options">
        <option value="table">table</option>
        <option value="xml">xml</option>
        <option value="json">json</option>
      </param>
    </inputs>
				
    <outputs>
        <data format="html" name="result" label="dbAnnot.results">
        	<change_format>
            		<when input="filetype" value="xml" format="xml" />
        	</change_format>
	</data>
    </outputs>


    <help>

.. class:: infomark

**What it does**

Add instructions here.

-----


**Usage**
dbAnnot.php inputValues='SP140' annotations='Genes,Pathways' fileType='table' TaxonId='9606' (optional)
    </help>
</tool>