comparison test-data/ligand.prmtop @ 3:c6afbb28f547 draft

"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit a68f9fb01e0cfff122aef8ddce5c866c687a4f9a"
author chemteam
date Fri, 28 Feb 2020 03:48:10 -0500
parents
children
comparison
equal deleted inserted replaced
2:0d640d752e8a 3:c6afbb28f547
1 %VERSION VERSION_STAMP = V0001.000 DATE = 10/09/09 16:30:00
2 %FLAG TITLE
3 %FORMAT(20a4)
4
5 %FLAG POINTERS
6 %FORMAT(10I8)
7 61 11 27 38 59 53 108 91 0 0
8 329 1 38 53 91 18 30 19 14 0
9 0 0 0 0 0 0 0 0 61 0
10 0
11 %FLAG ATOM_NAME
12 %FORMAT(20a4)
13 O11 H7 C11 C12 C13 H9 H8 C10 H6 C9 H5 C8 C7 S6 C5 C4 H4 C3 O3 H3
14 C2 H2 C1 H1 C14 C15 C16 O16 C17 C22 C21 H12 H13 C18 H10 C19 H11 C20 O23 C24
15 H14 H15 C25 H16 H17 N26 C27 H18 H19 C28 H20 H21 C29 H22 H23 C30 H24 H25 C31 H26
16 H27
17 %FLAG CHARGE
18 %FORMAT(5E16.8)
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21 2.58938883E+00 -1.16622720E+00 -4.42619667E+00 5.00931027E+00 -7.96314510E-01
22 -3.48957045E+00 2.56023315E+00 2.52561078E+00 -9.00728289E+00 7.66247715E+00
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27 7.61692140E-01 1.15347159E+00 3.11419107E+00 6.65113950E-01 1.03867110E+00
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29 7.61692140E-01 9.38448450E-01 -1.42862832E+00 6.86980710E-01 7.67158830E-01
30 -1.40676156E+00 7.92670050E-01 9.25692840E-01 3.03947964E+00 1.12249368E+00
31 2.75156730E-01
32 %FLAG MASS
33 %FORMAT(5E16.8)
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44 1.00800000E+00 1.00800000E+00 1.20100000E+01 1.00800000E+00 1.00800000E+00
45 1.20100000E+01 1.00800000E+00 1.00800000E+00 1.20100000E+01 1.00800000E+00
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48 %FORMAT(10I8)
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51 3 4 3 4 3 3 3 6 3 3
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57 %FORMAT(10I8)
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59 2 6 9 8 10 9 4 7 4 1
60 5 3 4 2 4 5 8 3 9 8
61 8 4 2 5 3 4 2 5 7 8
62 5 4 11 4 3 13 12 6 5 9
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66 %FORMAT(10I8)
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80 %FLAG RESIDUE_LABEL
81 %FORMAT(20a4)
82 RAL
83 %FLAG RESIDUE_POINTER
84 %FORMAT(10I8)
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86 %FLAG BOND_FORCE_CONSTANT
87 %FORMAT(5E16.8)
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89 3.72400000E+02 3.44300000E+02 4.78400000E+02 6.48000000E+02 3.49700000E+02
90 3.77400000E+02 4.11700000E+02 3.69600000E+02 3.86100000E+02 2.56600000E+02
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92 %FLAG BOND_EQUIL_VALUE
93 %FORMAT(5E16.8)
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96 1.46200000E+00 1.43400000E+00 9.74000000E-01 1.36200000E+00 1.77000000E+00
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99 %FORMAT(5E16.8)
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101 6.40000000E+01 4.94000000E+01 6.62000000E+01 5.08000000E+01 6.78000000E+01
102 6.24000000E+01 4.85000000E+01 6.98000000E+01 6.72000000E+01 6.87000000E+01
103 6.46000000E+01 6.89000000E+01 6.48000000E+01 6.36000000E+01 6.60000000E+01
104 6.98000000E+01 4.89000000E+01 6.36000000E+01 6.20000000E+01 6.39000000E+01
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107 %FORMAT(5E16.8)
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109 1.93557097E+00 1.91846674E+00 1.92649525E+00 1.89926811E+00 1.89228679E+00
110 2.05250808E+00 2.09457053E+00 2.08043336E+00 2.09387240E+00 2.15443535E+00
111 2.09683946E+00 2.19405434E+00 1.99124700E+00 2.14588324E+00 2.09614133E+00
112 2.09334880E+00 1.91061275E+00 2.06245646E+00 2.09317427E+00 1.69262103E+00
113 1.98112408E+00 2.09299974E+00 1.93888710E+00 1.98112408E+00 2.09614133E+00
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115 %FORMAT(5E16.8)
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118 3.62500000E+00 9.00000000E-01 2.87500000E+00 2.55000000E+00 1.10000000E+00
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121 %FORMAT(5E16.8)
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123 1.00000000E+00 2.00000000E+00 3.00000000E+00 1.00000000E+00 3.00000000E+00
124 2.00000000E+00 2.00000000E+00 2.00000000E+00 2.00000000E+00 2.00000000E+00
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126 %FLAG DIHEDRAL_PHASE
127 %FORMAT(5E16.8)
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129 3.14159400E+00 3.14159400E+00 0.00000000E+00 0.00000000E+00 0.00000000E+00
130 3.14159400E+00 3.14159400E+00 3.14159400E+00 3.14159400E+00 3.14159400E+00
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147 1.42791446E+05 3.69471530E+04 3.63097246E+04 6.78771368E+04 3.25969625E+03
148 7.44975864E+05 0.00000000E+00 8.82619071E+05 7.91627154E+04 2.01562190E+06
149 6.06829342E+05 5.89818288E+05 9.95480466E+05 6.20665997E+04 9.44293233E+05
150 6.82786631E+04 0.00000000E+00 8.61541883E+04 6.55825601E+03 2.02461849E+05
151 5.44261042E+04 5.33379252E+04 9.71708117E+04 4.98586848E+03 8.96776989E+04
152 7.51607703E+03
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154 %FORMAT(5E16.8)
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156 5.31102864E+02 1.16187983E+02 0.00000000E+00 1.04660679E+02 1.85196588E+01
157 1.21753341E+03 0.00000000E+00 1.04466382E+03 2.09772716E+02 2.04800000E+03
158 6.29300710E+02 0.00000000E+00 5.55666448E+02 1.03580945E+02 1.10369829E+03
159 5.64885984E+02 5.89183300E+02 0.00000000E+00 5.19163331E+02 9.73010751E+01
160 1.03022002E+03 5.29252520E+02 4.95732238E+02 6.93079947E+02 0.00000000E+00
161 5.99015525E+02 1.18043746E+02 1.17824605E+03 6.26720080E+02 5.85549272E+02
162 6.75612247E+02 1.03606917E+02 0.00000000E+00 9.40505980E+01 1.63092814E+01
163 1.89165096E+02 9.21192136E+01 8.66220817E+01 1.06076943E+02 1.43076527E+01
164 7.50714425E+02 0.00000000E+00 6.53361429E+02 1.26451907E+02 1.28923404E+03
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166 1.25287818E+02 0.00000000E+00 1.12529845E+02 2.00642027E+01 2.25248294E+02
167 1.11805549E+02 1.04986921E+02 1.26919150E+02 1.76949863E+01 1.36131731E+02
168 2.17257828E+01
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170 %FORMAT(10I8)
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172 171 2 156 159 2 156 162 2 147 150
173 2 147 153 2 138 141 1 138 144 1
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176 7 87 96 7 66 69 7 60 63 7
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178 24 7 12 15 7 9 18 7 0 3
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180 %FLAG BONDS_WITHOUT_HYDROGEN
181 %FORMAT(10I8)
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184 4 117 126 3 114 117 5 111 114 6
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191 33 36 18 27 33 8 21 27 8 12
192 33 8 9 12 8 6 9 8 6 21
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195 %FORMAT(10I8)
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197 171 3 168 165 174 2 165 174 177 4
198 165 174 180 4 162 156 165 2 159 156
199 162 3 159 156 165 2 156 165 168 2
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206 132 126 135 7 129 126 132 1 129 126
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216 30 27 33 12 24 21 27 12 21 27
217 30 12 15 12 33 12 12 9 18 12
218 9 12 15 12 6 9 18 12 6 21
219 24 12 3 0 6 22
220 %FLAG ANGLES_WITHOUT_HYDROGEN
221 %FORMAT(10I8)
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223 174 6 138 147 156 5 135 138 147 8
224 135 174 165 8 126 135 138 6 126 135
225 174 6 117 126 135 8 114 117 126 10
226 111 114 117 11 105 111 114 13 99 105
227 111 14 90 111 105 14 90 111 114 13
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230 78 84 87 16 78 84 99 16 75 78
231 81 17 75 78 84 18 72 75 78 19
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234 45 51 54 21 45 51 60 14 42 45
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241 21 14 9 12 33 14 6 9 12 14
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245 %FORMAT(10I8)
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247 168 165 174 177 1 168 165 174 180 1
248 162 156 165 168 2 162 156 165 171 2
249 162 156 165 174 3 159 156 165 168 2
250 159 156 165 171 2 159 156 165 174 3
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269 123 117 126 135 1 120 117 126 129 1
270 120 117 126 132 1 120 117 126 135 1
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272 111 114 117 120 10 111 114 117 123 10
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299 9 33 -12 -15 18 6 12 -9 -18 18
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301 %FORMAT(10I8)
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303 147 156 -165 174 6 147 156 -165 174 7
304 147 156 -165 174 8 138 135 174 165 4
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306 138 147 -156 165 7 138 147 -156 165 8
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310 117 126 135 138 4 117 126 -135 138 5
311 117 126 135 174 4 117 126 -135 174 5
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315 90 111 114 117 12 87 84 99 105 11
316 87 90 -111 105 11 87 90 111 114 11
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318 81 78 84 87 11 81 78 84 99 11
319 78 84 87 90 11 78 84 99 105 11
320 75 78 84 87 11 75 78 84 99 11
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325 45 42 72 75 11 45 51 -60 66 11
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327 42 45 51 60 11 42 72 -66 60 11
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344 78 72 -75 -36 18 42 66 -72 -75 18
345 45 60 -51 -54 18 45 72 -42 -39 18
346 33 75 -36 -39 18 12 27 -33 -36 18
347 0 6 -21 -9 18
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349 %FORMAT(10I8)
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351 8 4 5 6 7 8 9 10 11 12
352 5 6 7 8 9 10 12 13 6 7
353 8 10 11 12 13 14 26 7 10 12
354 13 8 12 9 10 11 12 13 10 11
355 12 11 12 13 14 26 12 13 13 14
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357 27 28 29 15 16 17 18 23 25 26
358 27 16 17 18 19 21 23 24 25 26
359 27 17 18 19 20 21 22 23 25 26
360 18 19 21 25 19 20 21 22 23 24
361 25 20 21 22 23 21 22 23 24 25
362 26 23 24 25 24 25 26 27 25 26
363 26 27 28 29 27 28 29 30 34 28
364 29 30 31 33 34 35 36 29 30 34
365 30 31 32 33 34 35 36 37 38 31
366 32 33 34 35 36 38 39 32 33 34
367 36 37 38 39 40 33 36 38 39 34
368 38 35 36 37 38 39 36 37 38 37
369 38 39 40 38 39 39 40 41 42 43
370 40 41 42 43 44 45 46 41 42 43
371 44 45 46 47 59 42 43 44 45 46
372 43 44 45 46 44 45 46 47 48 49
373 50 56 59 60 61 45 46 47 59 46
374 47 59 47 48 49 50 51 52 53 56
375 57 58 59 60 61 48 49 50 51 52
376 53 54 55 56 59 60 61 49 50 51
377 52 53 59 50 51 52 53 59 51 52
378 53 54 55 56 57 58 59 52 53 54
379 55 56 53 54 55 56 54 55 56 57
380 58 59 60 61 55 56 57 58 59 56
381 57 58 59 57 58 59 60 61 58 59
382 60 61 59 60 61 60 61 61 0
383 %FLAG HBOND_ACOEF
384 %FORMAT(5E16.8)
385
386 %FLAG HBOND_BCOEF
387 %FORMAT(5E16.8)
388
389 %FLAG HBCUT
390 %FORMAT(5E16.8)
391
392 %FLAG AMBER_ATOM_TYPE
393 %FORMAT(20a4)
394 oh ho ca ca ca ha ha ca ha ca ha ca cc ss ca ca ha ca oh ho
395 ca ha ca ha ca cd c o ca ca ca ha ha ca ha ca ha ca os c3
396 h1 h1 c3 h1 h1 n3 c3 h1 h1 c3 hc hc c3 hc hc c3 hc hc c3 h1
397 h1
398 %FLAG TREE_CHAIN_CLASSIFICATION
399 %FORMAT(20a4)
400 M E M M M E E B E S E M M S B S E S S E
401 B E B E S M M E M B S E E M E M E M M M
402 E E M E E M 3 E E 3 E E 3 E E B E E M E
403 E
404 %FLAG JOIN_ARRAY
405 %FORMAT(10I8)
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409 0 0 0 0 0 0 0 0 0 0
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414 %FORMAT(10I8)
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417 0 0 0 0 0 0 0 0 0 0
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419 0 0 0 0 0 0 0 0 0 0
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421 0
422 %FLAG RADIUS_SET
423 %FORMAT(1a80)
424 H(N)-modified Bondi radii (mbondi2)
425 %FLAG RADII
426 %FORMAT(5E16.8)
427 1.50000000E+00 1.20000000E+00 1.70000000E+00 1.70000000E+00 1.70000000E+00
428 1.20000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00 1.70000000E+00
429 1.20000000E+00 1.70000000E+00 1.70000000E+00 1.80000000E+00 1.70000000E+00
430 1.70000000E+00 1.20000000E+00 1.70000000E+00 1.50000000E+00 1.20000000E+00
431 1.70000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00 1.70000000E+00
432 1.70000000E+00 1.70000000E+00 1.50000000E+00 1.70000000E+00 1.70000000E+00
433 1.70000000E+00 1.20000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00
434 1.70000000E+00 1.20000000E+00 1.70000000E+00 1.50000000E+00 1.70000000E+00
435 1.20000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00 1.20000000E+00
436 1.55000000E+00 1.70000000E+00 1.20000000E+00 1.20000000E+00 1.70000000E+00
437 1.20000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00 1.20000000E+00
438 1.70000000E+00 1.20000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00
439 1.20000000E+00
440 %FLAG SCREEN
441 %FORMAT(5E16.8)
442 8.50000000E-01 8.50000000E-01 7.20000000E-01 7.20000000E-01 7.20000000E-01
443 8.50000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 7.20000000E-01
444 8.50000000E-01 7.20000000E-01 7.20000000E-01 9.60000000E-01 7.20000000E-01
445 7.20000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 8.50000000E-01
446 7.20000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 7.20000000E-01
447 7.20000000E-01 7.20000000E-01 8.50000000E-01 7.20000000E-01 7.20000000E-01
448 7.20000000E-01 8.50000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01
449 7.20000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 7.20000000E-01
450 8.50000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 8.50000000E-01
451 7.90000000E-01 7.20000000E-01 8.50000000E-01 8.50000000E-01 7.20000000E-01
452 8.50000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 8.50000000E-01
453 7.20000000E-01 8.50000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01
454 8.50000000E-01