Mercurial > repos > chemteam > packmol
annotate test-data/packmol_parameteroutfile_1.txt @ 2:539fb45630e6 draft default tip
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 3b99f08f22b9e0c16c0a0adc82f8c16c1a25cedf"
author | chemteam |
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date | Mon, 07 Oct 2019 12:46:54 -0400 |
parents | 0b8a0ce446f5 |
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0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
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1 # Template for packmol in Galaxy |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
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2 # |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
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3 |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
4 tolerance 2.0 |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
5 nloop 20 |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
6 maxit 20 |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
7 seed 101 |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
8 filetype pdb |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
9 output /tmp/tmprvsgniri/files/000/dataset_2.dat |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
10 |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
11 structure /tmp/tmprvsgniri/files/000/dataset_1.dat |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
12 # Galaxy datasetname - water.pdb |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
13 number 100 |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
14 radius 1.0 |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
15 resnumbers 0 |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
16 inside cube 0.0 0.0 0.0 40.0 |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
|
17 end structure |
0b8a0ce446f5
planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem commit 11519cd4ef5f8ac5864cdc8b3e93ff30115f2e27
chemteam
parents:
diff
changeset
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18 |