Mercurial > repos > chemteam > parmconv
comparison test-data/ligand.prmtop @ 0:6c6cecf51bd0 draft
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ commit 3664d8011044773cc3250ce15d712d97b0b91373"
author | chemteam |
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date | Tue, 07 Apr 2020 08:07:39 -0400 |
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children |
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-1:000000000000 | 0:6c6cecf51bd0 |
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1 %VERSION VERSION_STAMP = V0001.000 DATE = 10/09/09 16:30:00 | |
2 %FLAG TITLE | |
3 %FORMAT(20a4) | |
4 | |
5 %FLAG POINTERS | |
6 %FORMAT(10I8) | |
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8 329 1 38 53 91 18 30 19 14 0 | |
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10 0 | |
11 %FLAG ATOM_NAME | |
12 %FORMAT(20a4) | |
13 O11 H7 C11 C12 C13 H9 H8 C10 H6 C9 H5 C8 C7 S6 C5 C4 H4 C3 O3 H3 | |
14 C2 H2 C1 H1 C14 C15 C16 O16 C17 C22 C21 H12 H13 C18 H10 C19 H11 C20 O23 C24 | |
15 H14 H15 C25 H16 H17 N26 C27 H18 H19 C28 H20 H21 C29 H22 H23 C30 H24 H25 C31 H26 | |
16 H27 | |
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18 %FORMAT(5E16.8) | |
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20 2.64405573E+00 2.50374402E+00 -2.84450103E+00 2.80076751E+00 -1.48329522E+00 | |
21 2.58938883E+00 -1.16622720E+00 -4.42619667E+00 5.00931027E+00 -7.96314510E-01 | |
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80 %FLAG RESIDUE_LABEL | |
81 %FORMAT(20a4) | |
82 RAL | |
83 %FLAG RESIDUE_POINTER | |
84 %FORMAT(10I8) | |
85 1 | |
86 %FLAG BOND_FORCE_CONSTANT | |
87 %FORMAT(5E16.8) | |
88 3.35900000E+02 3.37300000E+02 3.03100000E+02 3.20600000E+02 3.01500000E+02 | |
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96 1.46200000E+00 1.43400000E+00 9.74000000E-01 1.36200000E+00 1.77000000E+00 | |
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107 %FORMAT(5E16.8) | |
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110 2.05250808E+00 2.09457053E+00 2.08043336E+00 2.09387240E+00 2.15443535E+00 | |
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113 1.98112408E+00 2.09299974E+00 1.93888710E+00 1.98112408E+00 2.09614133E+00 | |
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115 %FORMAT(5E16.8) | |
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120 %FLAG DIHEDRAL_PERIODICITY | |
121 %FORMAT(5E16.8) | |
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123 1.00000000E+00 2.00000000E+00 3.00000000E+00 1.00000000E+00 3.00000000E+00 | |
124 2.00000000E+00 2.00000000E+00 2.00000000E+00 2.00000000E+00 2.00000000E+00 | |
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127 %FORMAT(5E16.8) | |
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129 3.14159400E+00 3.14159400E+00 0.00000000E+00 0.00000000E+00 0.00000000E+00 | |
130 3.14159400E+00 3.14159400E+00 3.14159400E+00 3.14159400E+00 3.14159400E+00 | |
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133 %FORMAT(5E16.8) | |
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151 5.44261042E+04 5.33379252E+04 9.71708117E+04 4.98586848E+03 8.96776989E+04 | |
152 7.51607703E+03 | |
153 %FLAG LENNARD_JONES_BCOEF | |
154 %FORMAT(5E16.8) | |
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156 5.31102864E+02 1.16187983E+02 0.00000000E+00 1.04660679E+02 1.85196588E+01 | |
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167 1.11805549E+02 1.04986921E+02 1.26919150E+02 1.76949863E+01 1.36131731E+02 | |
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170 %FORMAT(10I8) | |
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178 24 7 12 15 7 9 18 7 0 3 | |
179 13 | |
180 %FLAG BONDS_WITHOUT_HYDROGEN | |
181 %FORMAT(10I8) | |
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192 33 8 9 12 8 6 9 8 6 21 | |
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195 %FORMAT(10I8) | |
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215 63 12 48 45 51 12 42 45 48 12 | |
216 30 27 33 12 24 21 27 12 21 27 | |
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218 9 12 15 12 6 9 18 12 6 21 | |
219 24 12 3 0 6 22 | |
220 %FLAG ANGLES_WITHOUT_HYDROGEN | |
221 %FORMAT(10I8) | |
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223 174 6 138 147 156 5 135 138 147 8 | |
224 135 174 165 8 126 135 138 6 126 135 | |
225 174 6 117 126 135 8 114 117 126 10 | |
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227 111 14 90 111 105 14 90 111 114 13 | |
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229 90 14 84 99 105 14 81 78 84 15 | |
230 78 84 87 16 78 84 99 16 75 78 | |
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232 66 72 75 20 60 66 72 14 54 51 | |
233 60 21 51 60 66 14 45 42 72 14 | |
234 45 51 54 21 45 51 60 14 42 45 | |
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240 12 33 27 14 12 33 36 30 9 6 | |
241 21 14 9 12 33 14 6 9 12 14 | |
242 6 21 27 14 0 6 9 21 0 6 | |
243 21 21 | |
244 %FLAG DIHEDRALS_INC_HYDROGEN | |
245 %FORMAT(10I8) | |
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247 168 165 174 177 1 168 165 174 180 1 | |
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249 162 156 165 174 3 159 156 165 168 2 | |
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251 156 165 174 177 1 156 165 174 180 1 | |
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259 141 138 147 153 1 141 138 147 156 1 | |
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261 138 147 156 159 3 138 147 156 162 3 | |
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263 135 174 165 168 1 135 174 165 171 1 | |
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265 129 126 135 138 5 129 126 135 174 5 | |
266 126 135 138 141 5 126 135 138 144 5 | |
267 126 135 174 177 5 126 135 174 180 5 | |
268 123 117 126 129 1 123 117 126 132 1 | |
269 123 117 126 135 1 120 117 126 129 1 | |
270 120 117 126 132 1 120 117 126 135 1 | |
271 114 117 126 129 9 114 117 126 132 9 | |
272 111 114 117 120 10 111 114 117 123 10 | |
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274 102 99 105 111 11 96 87 84 99 11 | |
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276 93 90 111 105 11 93 90 111 114 11 | |
277 90 111 105 108 11 87 84 99 102 11 | |
278 84 87 90 93 11 84 99 105 108 11 | |
279 78 84 87 96 11 78 84 99 102 11 | |
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282 54 51 60 63 11 51 60 66 69 11 | |
283 48 45 42 72 11 48 45 51 54 11 | |
284 48 45 51 60 11 45 51 54 57 12 | |
285 45 51 60 63 11 42 72 66 69 11 | |
286 39 42 45 48 11 30 27 33 36 11 | |
287 24 21 27 30 11 24 21 27 33 11 | |
288 18 9 6 21 11 18 9 12 33 11 | |
289 15 12 9 18 11 15 12 33 27 11 | |
290 15 12 33 36 11 12 33 27 30 11 | |
291 9 6 21 24 11 6 9 12 15 11 | |
292 6 21 27 30 11 3 0 6 9 12 | |
293 3 0 6 21 12 0 6 9 18 11 | |
294 0 6 21 24 11 99 111 -105 -108 18 | |
295 84 105 -99 -102 18 87 111 -90 -93 18 | |
296 84 90 -87 -96 18 60 72 -66 -69 18 | |
297 51 66 -60 -63 18 42 51 -45 -48 18 | |
298 21 33 -27 -30 18 6 27 -21 -24 18 | |
299 9 33 -12 -15 18 6 12 -9 -18 18 | |
300 %FLAG DIHEDRALS_WITHOUT_HYDROGEN | |
301 %FORMAT(10I8) | |
302 147 138 135 174 4 147 138 -135 174 5 | |
303 147 156 -165 174 6 147 156 -165 174 7 | |
304 147 156 -165 174 8 138 135 174 165 4 | |
305 138 135 -174 165 5 138 147 -156 165 6 | |
306 138 147 -156 165 7 138 147 -156 165 8 | |
307 135 138 147 156 1 135 174 -165 156 1 | |
308 126 135 138 147 4 126 135 -138 147 5 | |
309 126 135 174 165 4 126 135 -174 165 5 | |
310 117 126 135 138 4 117 126 -135 138 5 | |
311 117 126 135 174 4 117 126 -135 174 5 | |
312 114 117 126 135 1 111 114 117 126 10 | |
313 105 111 114 117 12 99 105 111 114 11 | |
314 90 87 84 99 11 90 111 -105 99 11 | |
315 90 111 114 117 12 87 84 99 105 11 | |
316 87 90 -111 105 11 87 90 111 114 11 | |
317 84 87 90 111 11 84 99 -105 111 11 | |
318 81 78 84 87 11 81 78 84 99 11 | |
319 78 84 87 90 11 78 84 99 105 11 | |
320 75 78 84 87 11 75 78 84 99 11 | |
321 72 75 78 81 13 72 75 78 84 13 | |
322 66 72 75 78 14 60 66 72 75 11 | |
323 54 51 60 66 11 51 45 42 72 11 | |
324 51 60 -66 72 11 45 42 72 66 11 | |
325 45 42 72 75 11 45 51 -60 66 11 | |
326 42 39 -36 75 15 42 45 51 54 11 | |
327 42 45 51 60 11 42 72 -66 60 11 | |
328 42 72 75 78 14 39 36 -75 72 16 | |
329 39 36 75 78 16 39 42 45 51 11 | |
330 39 42 72 66 11 39 42 -72 75 11 | |
331 36 39 42 45 17 36 39 -42 72 17 | |
332 36 75 72 66 14 36 75 -72 42 14 | |
333 36 75 78 81 13 36 75 78 84 13 | |
334 33 36 39 42 15 33 36 75 72 16 | |
335 33 36 75 78 16 27 33 36 39 14 | |
336 27 33 36 75 14 21 27 33 36 11 | |
337 12 9 6 21 11 12 33 -27 21 11 | |
338 12 33 36 39 14 12 33 36 75 14 | |
339 9 6 21 27 11 9 12 -33 27 11 | |
340 9 12 33 36 11 6 9 12 33 11 | |
341 6 21 -27 33 11 0 6 9 12 11 | |
342 0 6 21 27 11 90 105 -111 -114 18 | |
343 78 87 -84 -99 18 84 75 -78 -81 19 | |
344 78 72 -75 -36 18 42 66 -72 -75 18 | |
345 45 60 -51 -54 18 45 72 -42 -39 18 | |
346 33 75 -36 -39 18 12 27 -33 -36 18 | |
347 0 6 -21 -9 18 | |
348 %FLAG EXCLUDED_ATOMS_LIST | |
349 %FORMAT(10I8) | |
350 2 3 4 5 7 8 9 10 3 4 | |
351 8 4 5 6 7 8 9 10 11 12 | |
352 5 6 7 8 9 10 12 13 6 7 | |
353 8 10 11 12 13 14 26 7 10 12 | |
354 13 8 12 9 10 11 12 13 10 11 | |
355 12 11 12 13 14 26 12 13 13 14 | |
356 15 25 26 27 14 15 16 23 25 26 | |
357 27 28 29 15 16 17 18 23 25 26 | |
358 27 16 17 18 19 21 23 24 25 26 | |
359 27 17 18 19 20 21 22 23 25 26 | |
360 18 19 21 25 19 20 21 22 23 24 | |
361 25 20 21 22 23 21 22 23 24 25 | |
362 26 23 24 25 24 25 26 27 25 26 | |
363 26 27 28 29 27 28 29 30 34 28 | |
364 29 30 31 33 34 35 36 29 30 34 | |
365 30 31 32 33 34 35 36 37 38 31 | |
366 32 33 34 35 36 38 39 32 33 34 | |
367 36 37 38 39 40 33 36 38 39 34 | |
368 38 35 36 37 38 39 36 37 38 37 | |
369 38 39 40 38 39 39 40 41 42 43 | |
370 40 41 42 43 44 45 46 41 42 43 | |
371 44 45 46 47 59 42 43 44 45 46 | |
372 43 44 45 46 44 45 46 47 48 49 | |
373 50 56 59 60 61 45 46 47 59 46 | |
374 47 59 47 48 49 50 51 52 53 56 | |
375 57 58 59 60 61 48 49 50 51 52 | |
376 53 54 55 56 59 60 61 49 50 51 | |
377 52 53 59 50 51 52 53 59 51 52 | |
378 53 54 55 56 57 58 59 52 53 54 | |
379 55 56 53 54 55 56 54 55 56 57 | |
380 58 59 60 61 55 56 57 58 59 56 | |
381 57 58 59 57 58 59 60 61 58 59 | |
382 60 61 59 60 61 60 61 61 0 | |
383 %FLAG HBOND_ACOEF | |
384 %FORMAT(5E16.8) | |
385 | |
386 %FLAG HBOND_BCOEF | |
387 %FORMAT(5E16.8) | |
388 | |
389 %FLAG HBCUT | |
390 %FORMAT(5E16.8) | |
391 | |
392 %FLAG AMBER_ATOM_TYPE | |
393 %FORMAT(20a4) | |
394 oh ho ca ca ca ha ha ca ha ca ha ca cc ss ca ca ha ca oh ho | |
395 ca ha ca ha ca cd c o ca ca ca ha ha ca ha ca ha ca os c3 | |
396 h1 h1 c3 h1 h1 n3 c3 h1 h1 c3 hc hc c3 hc hc c3 hc hc c3 h1 | |
397 h1 | |
398 %FLAG TREE_CHAIN_CLASSIFICATION | |
399 %FORMAT(20a4) | |
400 M E M M M E E B E S E M M S B S E S S E | |
401 B E B E S M M E M B S E E M E M E M M M | |
402 E E M E E M 3 E E 3 E E 3 E E B E E M E | |
403 E | |
404 %FLAG JOIN_ARRAY | |
405 %FORMAT(10I8) | |
406 0 0 0 0 0 0 0 0 0 0 | |
407 0 0 0 0 0 0 0 0 0 0 | |
408 0 0 0 0 0 0 0 0 0 0 | |
409 0 0 0 0 0 0 0 0 0 0 | |
410 0 0 0 0 0 0 0 0 0 0 | |
411 0 0 0 0 0 0 0 0 0 0 | |
412 0 | |
413 %FLAG IROTAT | |
414 %FORMAT(10I8) | |
415 0 0 0 0 0 0 0 0 0 0 | |
416 0 0 0 0 0 0 0 0 0 0 | |
417 0 0 0 0 0 0 0 0 0 0 | |
418 0 0 0 0 0 0 0 0 0 0 | |
419 0 0 0 0 0 0 0 0 0 0 | |
420 0 0 0 0 0 0 0 0 0 0 | |
421 0 | |
422 %FLAG RADIUS_SET | |
423 %FORMAT(1a80) | |
424 H(N)-modified Bondi radii (mbondi2) | |
425 %FLAG RADII | |
426 %FORMAT(5E16.8) | |
427 1.50000000E+00 1.20000000E+00 1.70000000E+00 1.70000000E+00 1.70000000E+00 | |
428 1.20000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00 1.70000000E+00 | |
429 1.20000000E+00 1.70000000E+00 1.70000000E+00 1.80000000E+00 1.70000000E+00 | |
430 1.70000000E+00 1.20000000E+00 1.70000000E+00 1.50000000E+00 1.20000000E+00 | |
431 1.70000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00 1.70000000E+00 | |
432 1.70000000E+00 1.70000000E+00 1.50000000E+00 1.70000000E+00 1.70000000E+00 | |
433 1.70000000E+00 1.20000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00 | |
434 1.70000000E+00 1.20000000E+00 1.70000000E+00 1.50000000E+00 1.70000000E+00 | |
435 1.20000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00 1.20000000E+00 | |
436 1.55000000E+00 1.70000000E+00 1.20000000E+00 1.20000000E+00 1.70000000E+00 | |
437 1.20000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00 1.20000000E+00 | |
438 1.70000000E+00 1.20000000E+00 1.20000000E+00 1.70000000E+00 1.20000000E+00 | |
439 1.20000000E+00 | |
440 %FLAG SCREEN | |
441 %FORMAT(5E16.8) | |
442 8.50000000E-01 8.50000000E-01 7.20000000E-01 7.20000000E-01 7.20000000E-01 | |
443 8.50000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 7.20000000E-01 | |
444 8.50000000E-01 7.20000000E-01 7.20000000E-01 9.60000000E-01 7.20000000E-01 | |
445 7.20000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 8.50000000E-01 | |
446 7.20000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 7.20000000E-01 | |
447 7.20000000E-01 7.20000000E-01 8.50000000E-01 7.20000000E-01 7.20000000E-01 | |
448 7.20000000E-01 8.50000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 | |
449 7.20000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 7.20000000E-01 | |
450 8.50000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 8.50000000E-01 | |
451 7.90000000E-01 7.20000000E-01 8.50000000E-01 8.50000000E-01 7.20000000E-01 | |
452 8.50000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 8.50000000E-01 | |
453 7.20000000E-01 8.50000000E-01 8.50000000E-01 7.20000000E-01 8.50000000E-01 | |
454 8.50000000E-01 |