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1 __license__ = "MIT"
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2
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3 import unittest
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4 import lc_extend as lc
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5
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6
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7 class SimpleUnitTest(unittest.TestCase):
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8 def setUp(self):
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9 import os
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10
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11 os.environ["http_proxy"] = "" # work around for IOError: [Errno url error] invalid proxy for http:
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12 self.examplelc = """(Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN)
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13 (Ma2Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN)
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14 (GN??Ma3(GN??Ma6)Mb4GNb4(Fa6)GN)
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15 (GN??(GN??)Ma3(GN??Ma6)Mb4GNb4GN)
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16 (Ma2Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN,M)
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17 (A??GN??Ma3(GN??Ma6)Mb4GNb4(Fa6)GN)
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18 (GNb4(GN??Ma3)(GN??Ma6)Mb4GNb4(Fa6)GN)
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19 (GNb4(A??GN??Ma3)(GN??Ma6)Mb4GNb4GN)
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20 (NN??A??GN??Ma3(Ma6)Mb4GNb4(Fa6)GN)
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21 (Ma2Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN,M,M)
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22 (A??GN??Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN)
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23 (GNb4(A??GN??Ma3)(GN??Ma6)Mb4GNb4(Fa6)GN)
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24 (GNb4(A??GN??Ma3)(A??GN??Ma6)Mb4GNb4GN)
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25 (Ma2Ma2Ma3(Ma2Ma3(Ma2Ma6)Ma6)Mb4GNb4GN)
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26 (NN??A??GN??Ma3(A??GN??Ma6)Mb4GNb4GN)
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27 (GNb4(A??(Fa3)GN??Ma3)(GN??Ma6)Mb4GNb4(Fa6)GN)
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28 (GNb4(A??GN??Ma3)(A??GN??Ma6)Mb4GNb4(Fa6)GN)
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29 (A??GN??(A??GN??)Ma3(A??GN??Ma6)Mb4GNb4GN)
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30 (NN??A??GN??Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN)
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31 (GNb4(A??(Fa3)GN??Ma3)(A??GN??Ma6)Mb4GNb4(Fa6)GN)
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32 (A??GN??(A??GN??)Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN)
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33 (NN??A??GN??Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN,F)
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34 (NN??A??GN??Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN,F)
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35 (NN??A??GN??Ma3(NN??A??GN??Ma6)Mb4GNb4GN)
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36 (GNb4(NN??A??GN??Ma3)(A??GN??Ma6)Mb4GNb4(Fa6)GN)
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37 (NN??A??GN??(A??GN??)Ma3(A??GN??Ma6)Mb4GNb4GN)
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38 (NN??A??GN??Ma3(NN??A??GN??Ma6)Mb4GNb4(Fa6)GN)
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39 (NN??A??GN??(A??GN??)Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN)
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40 (GNb4(A??(Fa3)GN??(A??GN??)Ma3)(A??GN??Ma6)Mb4GNb4(Fa6)GN)
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41 (NN??A??(Fa3)GN??Ma3(NN??A??GN??Ma6)Mb4GNb4(Fa6)GN)
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42 (NN??A??GN??(A??GN??)Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN,F)
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43 (GNb4(A??(Fa3)GN??(A??(Fa3)GN??)Ma3)(A??GN??Ma6)Mb4GNb4(Fa6)GN)
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44 (NN??A??GN??(A??GN??)Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN,F,F)
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45 (NN??A??GN??(NN??A??GN??)Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN)
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46 (GNb4(NN??A??GN??(A??GN??)Ma3)(A??GN??Ma6)Mb4GNb4(Fa6)GN,F)
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47 (NN??A??GN??(A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN)
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48 (NN??A??GN??(NN??A??GN??)Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN,F)
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49 (GNb4(NN??A??GN??(A??GN??)Ma3)(A??GN??Ma6)Mb4GNb4(Fa6)GN,F,F)
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50 (NN??A??GN??(A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN,F)
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51 (NN??A??GN??(NN??A??GN??)Ma3(NN??A??GN??Ma6)Mb4GNb4(Fa6)GN)
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52 (NN??A??GN??(NN??A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN)
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53 (NN??A??GN??Ma3(NN??A??GN??(NN??A??(Fa3)GN??)Ma6)Mb4GNb4(Fa6)GN)
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54 (GNb4(NN??A??GN??Ma3)(NN??A??GN??(NN??A??GN??)Ma6)Mb4GNb4(Fa6)GN)
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55 (NN??A??GN??(NN??A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN,F)
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56 (NN??A??GN??(NN??A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN,F,F)
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57 (A??GN??(A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN,NN,NN,A??GN)
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58 (NN??A??GN??(NN??A??GN??)Ma3(NN??A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN,F)
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59 (A??GN??(A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN,F,NN,NN,A??GN)
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60 (NN??A??(Fa3)GN??(NN??A??GN??)Ma3(NN??A??GN??(NN??A??GN??)Ma6)Mb4GNb4(Fa6)GN)
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61 (A??GN??(A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN,NN,NN,NN,F,A??GN)
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62 (A??GN??(A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN,NN,NN,NN,NN,A??GN,F)
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63 (A??GN??(A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN,NN,NN,NN,NN,A??GN,A??GN,F)
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64 """
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65 pass
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66
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67 def tearDown(self):
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68 pass
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69
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70
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71 def test_simple_lc(self):
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72 import StringIO
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73
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74 lcinput = ["(Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN)"]
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75 lchandle = StringIO.StringIO('\n'.join(lcinput))
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76 m = lc.read_linearcode(lchandle, "logging.log")
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77 self.assertIsNotNone(m)
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78 self.assertEqual(1, len(m))
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79
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80 def test_commad_lc_extend(self):
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81 import StringIO
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82
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83 lcinput = ["(Ma2Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN,M)"]
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84 lchandle = StringIO.StringIO('\n'.join(lcinput))
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85 m = lc.read_linearcode(lchandle, "logging.log", True)
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86 self.assertIsNotNone(m)
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87 self.assertEqual(3, len(m))
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88 self.assertEqual(['M??Ma2Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN', 'Ma2Ma3(M??Ma3(Ma6)Ma6)Mb4GNb4GN', 'Ma2Ma3(Ma3(M??Ma6)Ma6)Mb4GNb4GN'],m)
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89
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90 def test_commad_lc_append(self):
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91 import StringIO
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92
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93 lcinput = ["(Ma2Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN,M)"]
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94 lchandle = StringIO.StringIO('\n'.join(lcinput))
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95 m = lc.read_linearcode(lchandle, "logging.log")
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96 self.assertIsNotNone(m)
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97 self.assertEqual(1, len(m))
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98 self.assertEqual("((M??)X??)(Ma2Ma3(Ma3)(Ma6)Ma6)Mb4GNb4GN", m[0])
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99
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100 def test_empty_stream(self):
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101 """
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102 should raise IOError
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103 """
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104 with self.assertRaises(IOError):
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105 m = lc.read_linearcode([], "logging.log")
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106 with self.assertRaises(IOError):
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107 m = lc.read_linearcode("", "logging.log")
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108 with self.assertRaises(IOError):
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109 m = lc.read_linearcode([], "logging.log")
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110
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111 def test_empty_logger(self):
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112 """
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113 should work as usual as logger is defined by default
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114 """
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115 import StringIO
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116
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117 lcinput = ["(Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN)"]
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118 lchandle = StringIO.StringIO('\n'.join(lcinput))
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119 m = lc.read_linearcode(lchandle)
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120 self.assertIsNotNone(m)
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121
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122 def test_many_lc_extend(self):
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123 import StringIO
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124
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125 lchandle = StringIO.StringIO(''.join(self.examplelc))
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126 m = lc.read_linearcode(lchandle, extend=True)
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127 self.assertIsNotNone(m)
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128 self.assertEqual(150, len(m))
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129
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130 def test_many_lc_append(self):
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131 import StringIO
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132
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133 lchandle = StringIO.StringIO(''.join(self.examplelc))
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134 m = lc.read_linearcode(lchandle)
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135 self.assertIsNotNone(m)
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136 self.assertEqual(52, len(m)) # that is equal to number of examples
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137
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138
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139 def run_tests():
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140 unittest.main()
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141
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142
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143 if __name__ == '__main__':
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144 run_tests()
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145
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146
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