Mercurial > repos > chrisb > gap_all_glycan_tools
comparison convert_detect_formats/rings_kcf_to_image/README_convertKCF.md @ 0:89592faa2875 draft
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| author | chrisb |
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| date | Wed, 23 Mar 2016 14:35:56 -0400 |
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| -1:000000000000 | 0:89592faa2875 |
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| 1 | |
| 2 [TOC] | |
| 3 | |
| 4 # 1. post_kcf_to_image.py | |
| 5 | |
| 6 **This tool reads a kcf file (containing glycans) and returns images in CFG notation using the server at RINGS. Images are presented in html and the first kcf glycan is returned as a png.** | |
| 7 | |
| 8 ## Works with Galaxy? | |
| 9 Yes. see [post_kcf_to_image.xml](post_kcf_to_image.xml) | |
| 10 | |
| 11 | |
| 12 ## Command line usage | |
| 13 ``` | |
| 14 ../../virtualpy/bin/activate | |
| 15 python post_kcf_to_image.py $input $pngoutput $htmloutput | |
| 16 ``` | |
| 17 | |
| 18 ## Help | |
| 19 ``` | |
| 20 ../../virtualpy/bin/activate | |
| 21 python post_kcf_to_image.py -h | |
| 22 ``` | |
| 23 | |
| 24 ## Unit Testing? | |
| 25 Yes. Use test_rings_kcf_to_image.py | |
| 26 | |
| 27 ``` | |
| 28 ../../virtualpy/bin/activate | |
| 29 python test_rings_kcf_to_image.py | |
| 30 ``` |