Mercurial > repos > chrisb > gap_all_glycan_tools
comparison convert_detect_formats/rings_kcf_to_image/README_convertKCF.md @ 0:89592faa2875 draft
Uploaded
author | chrisb |
---|---|
date | Wed, 23 Mar 2016 14:35:56 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:89592faa2875 |
---|---|
1 | |
2 [TOC] | |
3 | |
4 # 1. post_kcf_to_image.py | |
5 | |
6 **This tool reads a kcf file (containing glycans) and returns images in CFG notation using the server at RINGS. Images are presented in html and the first kcf glycan is returned as a png.** | |
7 | |
8 ## Works with Galaxy? | |
9 Yes. see [post_kcf_to_image.xml](post_kcf_to_image.xml) | |
10 | |
11 | |
12 ## Command line usage | |
13 ``` | |
14 ../../virtualpy/bin/activate | |
15 python post_kcf_to_image.py $input $pngoutput $htmloutput | |
16 ``` | |
17 | |
18 ## Help | |
19 ``` | |
20 ../../virtualpy/bin/activate | |
21 python post_kcf_to_image.py -h | |
22 ``` | |
23 | |
24 ## Unit Testing? | |
25 Yes. Use test_rings_kcf_to_image.py | |
26 | |
27 ``` | |
28 ../../virtualpy/bin/activate | |
29 python test_rings_kcf_to_image.py | |
30 ``` |