Mercurial > repos > chrisb > gap_all_glycan_tools
comparison manipulate/minimal_kcf/README_minimal.md @ 0:89592faa2875 draft
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| author | chrisb |
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| date | Wed, 23 Mar 2016 14:35:56 -0400 |
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| -1:000000000000 | 0:89592faa2875 |
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| 1 [TOC] | |
| 2 | |
| 3 # rename_kcf.py | |
| 4 This tool reads kcf glycans and removes all additional data which may cause tools to malfunction. For instance REFERENCE, DBLINKS, MASS etc. Only ENTRY, NODE and EDGE entries are kept | |
| 5 | |
| 6 ## Works with Galaxy? | |
| 7 Yes. see [minimal_kcf.xml](minimal_kcf.xml) | |
| 8 | |
| 9 ## Command line usage | |
| 10 | |
| 11 ``` | |
| 12 ../../virtualpy/bin/activate | |
| 13 python minimal_kcf.py -i $input -o $kcfoutput | |
| 14 ``` | |
| 15 | |
| 16 | |
| 17 ## Help | |
| 18 ``` | |
| 19 ../../virtualpy/bin/activate | |
| 20 python minimal_kcf.py -h | |
| 21 ``` | |
| 22 | |
| 23 ## Unit Testing? | |
| 24 Yes. | |
| 25 | |
| 26 | |
| 27 ``` | |
| 28 ../../virtualpy/bin/activate | |
| 29 python test_minimal_kcf.py | |
| 30 ``` |