--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_data/cfg/README_CFG.md	Wed Mar 23 14:35:56 2016 -0400
@@ -0,0 +1,42 @@
+[TOC]
+
+# 1. cfg_get_glycan_from_cells.py
+
+Retrieve glycan profiling data from the CFG.
+
+With focus on retrieving the annotated mass spec data (.msa files)
+
+## Works with Galaxy?
+Yes. see [getcfgcells.xml](getcfgcells.xml)
+
+## Command line usage
+```
+../../virtualpy/bin/activate
+python cfg_get_glycan_from_cells.py
+```
+
+This will use the default settings and by default pull all data from the CFG. This may take some time.
+The CFG may be unimpressed, if you do this too often.
+
+To specify which data you would like to retrieve :
+```
+../../virtualpy/bin/activate
+cfg_get_glycan_from_cells.py -s "$species" -p "$investigator" -g "$glycantype" -c "$celltype" -o "$html_file" --filepath "msa_output"
+```
+
+## Help
+```
+../../virtualpy/bin/activate
+python cfg_get_glycan_from_cells.py -h
+```
+
+## Unit Testing?
+Not yet! Although some testing ha been done using the htmlfortesting.html and short-htmlfortesting.html. This code has also been used within Galaxy to retrieve data.
+So it _should work just fine..._
+
+In principle:
+
+```
+../../virtualpy/bin/activate
+python  test_cfg_get_glycan_from_cells.py
+```