Mercurial > repos > chrisb > gap_all_glycan_tools
diff manipulate/minimal_kcf/minimal_kcf.xml @ 0:89592faa2875 draft
Uploaded
author | chrisb |
---|---|
date | Wed, 23 Mar 2016 14:35:56 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/manipulate/minimal_kcf/minimal_kcf.xml Wed Mar 23 14:35:56 2016 -0400 @@ -0,0 +1,42 @@ +<tool id="glytools_minimal_KCF" name="GAP Minimal KCF" version="0.3"> + <description>Keep only ENTRY, NODE, EDGE content</description> + <requirements> + <requirement type="package" version="1.0">python_for_glycan_tools</requirement> + </requirements> + <command interpreter="python"><![CDATA[ minimal_kcf.py -i $input -o $kcfoutput ]]></command> + <inputs> + <param format="kcf" name="input" type="data" label="KCF source file"/> + </inputs> + <outputs> + <data format="kcf" name="kcfoutput" label="Minimal KCF $input.name"/> + </outputs> + + <citations> + <!-- --> + <citation type="doi">10.1002/0471250953.bi0112s38</citation> + </citations> + + <help> <![CDATA[ +.. class:: infomark + +**What this tool does** + +This tool reads KCF glycans and removes all additional data which may cause tools to malfunction. For instance REFERENCE, DBLINKS, MASS etc. Only ENTRY, NODE and EDGE entries are kept + + +.. class:: infomark + +**Input** + +*KCF* + +.. class:: infomark + +**Output** + +*KCF* + +]]> + </help> + +</tool>