diff manipulate/minimal_kcf/minimal_kcf.xml @ 0:89592faa2875 draft

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author chrisb
date Wed, 23 Mar 2016 14:35:56 -0400
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+++ b/manipulate/minimal_kcf/minimal_kcf.xml	Wed Mar 23 14:35:56 2016 -0400
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+<tool id="glytools_minimal_KCF" name="GAP Minimal KCF" version="0.3">
+    <description>Keep only ENTRY, NODE, EDGE content</description>
+    <requirements>
+        <requirement type="package" version="1.0">python_for_glycan_tools</requirement>
+    </requirements> 
+    <command interpreter="python"><![CDATA[ minimal_kcf.py -i $input -o $kcfoutput ]]></command>
+    <inputs>
+        <param format="kcf" name="input" type="data" label="KCF source file"/>
+    </inputs>
+    <outputs>
+        <data format="kcf" name="kcfoutput" label="Minimal KCF $input.name"/>
+    </outputs>
+
+ <citations>
+     <!--  -->
+     <citation type="doi">10.1002/0471250953.bi0112s38</citation>
+  </citations>
+
+    <help> <![CDATA[ 
+.. class:: infomark
+
+**What this tool does**
+
+This tool reads KCF glycans and removes all additional data which may cause tools to malfunction. For instance REFERENCE, DBLINKS, MASS etc. Only ENTRY, NODE and EDGE entries are kept
+
+
+.. class:: infomark
+
+**Input**
+
+*KCF*
+
+.. class:: infomark
+
+**Output**
+
+*KCF*
+
+]]>
+    </help>
+
+</tool>