<tool id="glytools_converter_soap" name="GAP convert format (SOAP)" version="0.3">
    <description> Convert between multiple glycan formats using the RINGS SOAP service</description>
    <requirements>
        <requirement type="package" version="1.0">python_for_glycan_tools</requirement>
    </requirements> 
    <command interpreter="python"><![CDATA[glycan_convert.py -i $input -f $changeformat -o $output]]></command>
    <inputs>
        <param format="kcf,glycoct_xml,linucs,linearcode,iupac,glydeii,txt" name="input" type="data" label="Source file"/>
        <param name="changeformat" type="select" label="Format to convert to">
          <option value="KCF" selected="true"> KCF </option>
          <option value="LinearCode" selected="false"> LinearCode </option>
          <option value="LINUCS" selected="false"> LINUCS </option>
          <option value="GlycoCT" selected="false"> Glycoct </option>
          <option value="IUPAC" selected="false"> IUPAC </option>
        </param>
    </inputs>
    <outputs>

        <data format="input" name="output" metadata_source="input">
            <change_format>
                <when input="changeformat" value="KCF" format="kcf"/>
                <when input="changeformat" value="GlycoCT" format="glycoct"/>
                <when input="changeformat" value="LinearCode" format="linearcode"/>
                <when input="changeformat" value="IUPAC" format="iupac"/>
                <when input="changeformat" value="LINUCS" format="linucs"/>
            </change_format>
        </data>
    </outputs>

 <citations>
     <!--  -->
     <citation type="doi">10.1089/omi.2009.0129</citation>
</citations>

    <help> <![CDATA[ 
.. class:: infomark

**What this tool does**

This tool converts between glycan formats using the RINGS SOAP convert service.

.. class:: infomark

**Input**

Any glycan dataset *except* for GlycoCT{condensed}, WURCS, MDL Mol and LINUCS (LINUCS only converts to LINUCS with this tools and the other formats do not convert)


.. class:: infomark

**Output**

Can only convert to KCF, GlycoCT (xml), LinearCode, LINUCS, IUPAC  (last checked 25/02/2015).

]]>
    </help>

</tool>