Mercurial > repos > chrisb > gap_all_glycan_tools
view get_data/kegg_glycan/test_getkcfKEGG.py @ 1:0a5e0df17054 draft default tip
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author | chrisb |
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date | Fri, 06 May 2016 08:05:48 -0400 |
parents | 89592faa2875 |
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__license__ = "MIT" import unittest import getkcfKEGG as gk class SimpleUnitTest(unittest.TestCase): def setUp(self): import os os.environ["http_proxy"] = "" # work around for IOError: [Errno url error] invalid proxy for http: pass def tearDown(self): pass def test_empty_stream(self): """ if empty stream then should return None""" with self.assertRaises(IOError): m = gk.get_kcf_from_kegg(None) with self.assertRaises(IOError): m = gk.get_kcf_from_kegg([]) def test_no_matching_entry(self): """ if non G* entry then return empty lists """ import StringIO import urllib2 glycanindex = "X00092" handle = StringIO.StringIO(''.join(glycanindex)) m, n = gk.get_kcf_from_kegg(handle) self.assertEqual(m, []) self.assertEqual(n, []) def test_malformed_entry(self): """ if malformed entry that looks like "G*" then return HTTPError """ import StringIO import urllib2 glycanindex = "GL00092" handle = StringIO.StringIO(''.join(glycanindex)) with self.assertRaises(urllib2.HTTPError): m, n = gk.get_kcf_from_kegg(handle) def test_glycan(self): """ """ import StringIO glycanindex = "G00092" handle = StringIO.StringIO(''.join(glycanindex)) m, n = gk.get_kcf_from_kegg(handle) self.assertIsNotNone(m) self.assertIsNotNone(n) self.assertEqual(1, len(m)) self.assertEqual(1, len(n)) def test_several_glycans(self): """ """ import StringIO glycanindex = "G00092\nG00091\nG00093" handle = StringIO.StringIO(''.join(glycanindex)) m, n = gk.get_kcf_from_kegg(handle) self.assertIsNotNone(m) self.assertIsNotNone(n) self.assertEqual(3, len(m)) self.assertEqual(3, len(n))