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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
author chrisd
date Sun, 27 Mar 2016 02:42:55 -0400
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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92 "description": "",
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93 "name": "Input Dataset"
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94 }
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95 ],
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96 "label": "FastQ Reverse",
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97 "name": "Input dataset",
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98 "outputs": [],
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99 "position": {
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102 },
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104 "tool_id": null,
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105 "tool_state": "{\"name\": \"Input Dataset\"}",
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106 "tool_version": null,
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107 "type": "data_input",
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109 "workflow_outputs": []
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110 },
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111 "4": {
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112 "annotation": "",
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115 "input_connections": {
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116 "paired_end|paired_input_type_conditional|fastq_r1_in": {
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117 "id": 2,
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118 "output_name": "output"
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119 },
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120 "paired_end|paired_input_type_conditional|fastq_r2_in": {
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121 "id": 3,
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122 "output_name": "output"
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123 }
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124 },
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125 "inputs": [],
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127 "name": "Trimmomatic",
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128 "outputs": [
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129 {
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130 "name": "fastq_out_paired",
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131 "type": "input"
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132 },
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133 {
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134 "name": "fastq_out_unpaired",
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135 "type": "input"
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136 },
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137 {
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138 "name": "fastq_out_r1_paired",
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139 "type": "fastqsanger"
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140 },
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141 {
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142 "name": "fastq_out_r2_paired",
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143 "type": "fastqsanger"
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144 },
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145 {
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146 "name": "fastq_out_r1_unpaired",
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147 "type": "fastqsanger"
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148 },
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149 {
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150 "name": "fastq_out_r2_unpaired",
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151 "type": "fastqsanger"
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152 },
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153 {
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154 "name": "fastq_out",
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155 "type": "fastqsanger"
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156 }
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157 ],
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158 "position": {
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159 "left": 435,
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161 },
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162 "post_job_actions": {
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163 "DeleteIntermediatesActionfastq_out_paired": {
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164 "action_arguments": {},
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165 "action_type": "DeleteIntermediatesAction",
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166 "output_name": "fastq_out_paired"
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167 },
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168 "HideDatasetActionfastq_out": {
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169 "action_arguments": {},
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170 "action_type": "HideDatasetAction",
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171 "output_name": "fastq_out"
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172 },
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173 "HideDatasetActionfastq_out_paired": {
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174 "action_arguments": {},
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175 "action_type": "HideDatasetAction",
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176 "output_name": "fastq_out_paired"
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177 },
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178 "HideDatasetActionfastq_out_r1_unpaired": {
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179 "action_arguments": {},
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180 "action_type": "HideDatasetAction",
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181 "output_name": "fastq_out_r1_unpaired"
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182 },
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183 "HideDatasetActionfastq_out_r2_unpaired": {
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184 "action_arguments": {},
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185 "action_type": "HideDatasetAction",
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186 "output_name": "fastq_out_r2_unpaired"
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187 },
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188 "HideDatasetActionfastq_out_unpaired": {
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189 "action_arguments": {},
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190 "action_type": "HideDatasetAction",
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191 "output_name": "fastq_out_unpaired"
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192 }
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193 },
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194 "tool_errors": null,
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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197 "tool_version": "0.32.3",
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198 "type": "tool",
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200 "workflow_outputs": [
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201 {
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205 },
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206 {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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208 "output_name": "fastq_out_r2_paired",
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210 }
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211 ]
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212 },
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213 "5": {
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214 "annotation": "",
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215 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1",
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217 "input_connections": {
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218 "input_type|fastq_input1": {
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220 "output_name": "fastq_out_r1_paired"
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221 },
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222 "input_type|fastq_input2": {
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223 "id": 4,
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224 "output_name": "fastq_out_r2_paired"
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225 },
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226 "reference_source|ref_file": {
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228 "output_name": "output"
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229 }
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230 },
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231 "inputs": [],
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232 "label": null,
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233 "name": "Map with BWA",
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234 "outputs": [
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235 {
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236 "name": "bam_output",
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237 "type": "bam"
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238 }
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239 ],
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240 "position": {
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241 "left": 763,
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243 },
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244 "post_job_actions": {
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245 "DeleteIntermediatesActionbam_output": {
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246 "action_arguments": {},
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247 "action_type": "DeleteIntermediatesAction",
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248 "output_name": "bam_output"
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249 }
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250 },
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251 "tool_errors": null,
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252 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1",
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253 "tool_state": "{\"__page__\": 0, \"input_type\": \"{\\\"adv_pe_options\\\": {\\\"__current_case__\\\": 1, \\\"adv_pe_options_selector\\\": \\\"do_not_set\\\"}, \\\"fastq_input2\\\": null, \\\"input_type_selector\\\": \\\"paired\\\", \\\"__current_case__\\\": 0, \\\"fastq_input1\\\": null}\", \"__rerun_remap_job_id__\": null, \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"illumina\\\", \\\"__current_case__\\\": 0}\", \"reference_source\": \"{\\\"ref_file\\\": null, \\\"reference_source_selector\\\": \\\"history\\\", \\\"__current_case__\\\": 1, \\\"index_a\\\": \\\"auto\\\"}\"}",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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254 "tool_version": "0.7.12.1",
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255 "type": "tool",
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256 "uuid": "ddf4de24-ceec-4dd7-a4a2-cd91994b4346",
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257 "workflow_outputs": [
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258 {
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259 "label": null,
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260 "output_name": "bam_output",
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261 "uuid": "ad467c2c-4b48-4f06-9c68-ced14296afb8"
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262 }
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263 ]
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264 },
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265 "6": {
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266 "annotation": "",
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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287 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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291 "action_type": "DeleteIntermediatesAction",
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292 "output_name": "outFile"
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293 }
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294 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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296 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/1.136.0",
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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298 "tool_version": "1.136.0",
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299 "type": "tool",
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300 "uuid": "bf824957-0907-4c1f-983d-f26a88826253",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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301 "workflow_outputs": [
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302 {
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304 "output_name": "outFile",
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306 }
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307 ]
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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308 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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311 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1",
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313 "input_connections": {
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314 "input_type|bam_input": {
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315 "id": 6,
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316 "output_name": "outFile"
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317 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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318 "reference_source|ref_file": {
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319 "id": 0,
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320 "output_name": "output"
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321 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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322 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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323 "inputs": [],
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324 "label": null,
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325 "name": "Map with BWA",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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326 "outputs": [
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327 {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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328 "name": "bam_output",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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329 "type": "bam"
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330 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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331 ],
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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332 "position": {
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333 "left": 1356,
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335 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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336 "post_job_actions": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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337 "DeleteIntermediatesActionbam_output": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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338 "action_arguments": {},
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339 "action_type": "DeleteIntermediatesAction",
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340 "output_name": "bam_output"
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341 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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342 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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343 "tool_errors": null,
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344 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1",
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345 "tool_state": "{\"__page__\": 0, \"input_type\": \"{\\\"bam_input\\\": null, \\\"input_type_selector\\\": \\\"paired_bam\\\", \\\"__current_case__\\\": 3, \\\"adv_bam_pe_options\\\": {\\\"__current_case__\\\": 1, \\\"adv_pe_options_selector\\\": \\\"do_not_set\\\"}}\", \"__rerun_remap_job_id__\": null, \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"illumina\\\", \\\"__current_case__\\\": 0}\", \"reference_source\": \"{\\\"ref_file\\\": null, \\\"reference_source_selector\\\": \\\"history\\\", \\\"__current_case__\\\": 1, \\\"index_a\\\": \\\"auto\\\"}\"}",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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346 "tool_version": "0.7.12.1",
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347 "type": "tool",
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348 "uuid": "9d1d2fe9-c3c6-4a34-a28d-50b2f7a06e11",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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349 "workflow_outputs": [
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350 {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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351 "label": null,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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352 "output_name": "bam_output",
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353 "uuid": "981cdac9-e993-471c-87c2-c667431ed47f"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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354 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
355 ]
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
356 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
365 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
366 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
369 "name": "SortSam",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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379 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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382 "action_arguments": {},
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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383 "action_type": "DeleteIntermediatesAction",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
384 "output_name": "outFile"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
385 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
386 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
387 "tool_errors": null,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
388 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SortSam/1.136.1",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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389 "tool_state": "{\"inputFile\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"sort_order\": \"\\\"queryname\\\"\", \"validation_stringency\": \"\\\"LENIENT\\\"\"}",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
390 "tool_version": "1.136.1",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
391 "type": "tool",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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392 "uuid": "42d32394-d968-4cb0-ae06-69e551a8d328",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
393 "workflow_outputs": [
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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diff changeset
394 {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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395 "label": null,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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396 "output_name": "outFile",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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398 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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399 ]
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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400 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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401 "9": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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402 "annotation": "",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
403 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
405 "input_connections": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
406 "input1": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
407 "id": 8,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
408 "output_name": "outFile"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
409 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
410 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
411 "inputs": [],
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
412 "label": null,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
413 "name": "BAM-to-SAM",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
414 "outputs": [
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
415 {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
416 "name": "output1",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
417 "type": "sam"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
418 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
419 ],
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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420 "position": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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421 "left": 1949,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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422 "top": 200
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
423 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
424 "post_job_actions": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
425 "DeleteIntermediatesActionoutput1": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
426 "action_arguments": {},
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
427 "action_type": "DeleteIntermediatesAction",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
428 "output_name": "output1"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
429 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
430 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
431 "tool_errors": null,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
parents:
diff changeset
432 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
433 "tool_state": "{\"header\": \"\\\"-h\\\"\", \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"__page__\": 0}",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
parents:
diff changeset
434 "tool_version": "2.0",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
parents:
diff changeset
435 "type": "tool",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
436 "uuid": "9fe23b03-b221-4007-a406-44b05be85066",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
437 "workflow_outputs": [
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
parents:
diff changeset
438 {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
439 "label": null,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
440 "output_name": "output1",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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441 "uuid": "c34f9ca8-8d2d-4d8a-bb24-c3a030ff45af"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
442 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
443 ]
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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diff changeset
444 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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478 "output_name": "output1"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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480 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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482 "tool_id": "toolshed.g2.bx.psu.edu/repos/chrisd/coverage_sampler/gene_fraction/0.1.0",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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484 "tool_version": "0.1.0",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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485 "type": "tool",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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486 "uuid": "8305b84c-ceb2-41bb-9f07-4c7bedff5d0a",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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487 "workflow_outputs": [
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
488 {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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489 "label": null,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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490 "output_name": "output1",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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492 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
493 ]
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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494 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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495 "11": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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496 "annotation": "",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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497 "content_id": "toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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499 "input_connections": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
500 "input1": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
502 "output_name": "output"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
503 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
504 "sam_type|sampe_input2": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
506 "output_name": "output1"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
507 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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508 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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509 "inputs": [],
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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510 "label": null,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
511 "name": "Snip Finder",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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512 "outputs": [
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
513 {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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514 "name": "output1",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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515 "type": "tabular"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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517 ],
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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518 "position": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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521 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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522 "post_job_actions": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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523 "RenameDatasetActionoutput1": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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524 "action_arguments": {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
525 "newname": "Snip Results"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
526 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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527 "action_type": "RenameDatasetAction",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
parents:
diff changeset
528 "output_name": "output1"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
529 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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530 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
531 "tool_errors": null,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
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diff changeset
532 "tool_id": "toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
chrisd
parents:
diff changeset
533 "tool_state": "{\"sam_type\": \"{\\\"best\\\": \\\"False\\\", \\\"mode\\\": \\\"paired_end\\\", \\\"__current_case__\\\": 1, \\\"sampe_input2\\\": null}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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534 "tool_version": "0.1.0",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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535 "type": "tool",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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536 "uuid": "b7bac673-aed8-4abd-a873-f842b9497ac8",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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537 "workflow_outputs": [
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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538 {
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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539 "label": null,
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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540 "output_name": "output1",
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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541 "uuid": "fb7fbbba-05bd-4477-a0ee-8e51bcbeddd2"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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542 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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543 ]
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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544 }
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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545 },
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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546 "uuid": "6c6ee2ed-be38-4787-9a8e-5ab9a872a00e"
d1896971200b planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 9e86c4ae3eb19f5c493ac96f86c6235ab3df5368
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547 }