Mercurial > repos > chrisd > amrplusplus_workflow

annotate README.rst @ 8:0eae27b15aa0 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 5e58b41d1ef7243f07d32905bd822d0a13876344-dirty
author chrisd
date Thu, 14 Jul 2016 19:04:32 -0400
parents 04f9c20fecf8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
1 What is this?
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
2 =============
3
2b8f8d1900fa planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902-dirty
chrisd
parents: 2
diff changeset
3
5
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents: 4
diff changeset
4 A suite that contains a collection of tools and workflows which can be used to identify and characterize resistance and virulence genes.
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents: 4
diff changeset
5
04f9c20fecf8 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents: 4
diff changeset
6 .. image:: https://raw.githubusercontent.com/cdeanj/galaxytools/master/workflows/amrplusplus/workflow.jpeg
2
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
7
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
8 Availability
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
9 ============
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
10
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
11 The workflow and the tools needed to run the workflow can be downloaded from Galaxy's main toolshed
3
2b8f8d1900fa planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902-dirty
chrisd
parents: 2
diff changeset
12
2b8f8d1900fa planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902-dirty
chrisd
parents: 2
diff changeset
13 https://toolshed.g2.bx.psu.edu/view/chrisd/amrplusplus_workflow/
2
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
14
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
15 Development is being done on GitHub
3
2b8f8d1900fa planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902-dirty
chrisd
parents: 2
diff changeset
16
2b8f8d1900fa planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902-dirty
chrisd
parents: 2
diff changeset
17 https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus
2
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
18
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
19 MIT License
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
20 ===========
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
21
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
22 Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
23
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
24 The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
25
7550d3bc44a4 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 46308898745b6aed965f5ce7e4375cc422eba902
chrisd
parents:
diff changeset
26 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.