Mercurial > repos > chrisd > resistome_analyzer

comparison resistome_analyzer.xml @ 1:c9fbf44a96f7 draft default tip

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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 8ae28ea5f8b137ff7403efbb968152aa6aae22bf
author chrisd
date Tue, 11 Oct 2016 03:47:35 -0400
parents 6e3417efcef3
children
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0:6e3417efcef3 1:c9fbf44a96f7
13 -sam_fp $sam 13 -sam_fp $sam
14 -gene_fp $gene 14 -gene_fp $gene
15 -mech_fp $mech 15 -mech_fp $mech
16 -class_fp $class 16 -class_fp $class
17 -group_fp $group 17 -group_fp $group
18 -t $threshold
18 ]]></command> 19 ]]></command>
19 <inputs> 20 <inputs>
20 <param type="data" name="reference" format="fasta" label="Reference sequence" /> 21 <param type="data" name="reference" format="fasta" label="Reference sequence" />
21 <param type="data" name="sam" format="sam" label="SAM file" /> 22 <param type="data" name="sam" format="sam" label="SAM file" />
22 <param type="data" name="annotation" format="csv" label="Annotation file" /> 23 <param type="data" name="annotation" format="csv" label="Annotation file" />
24 <param name="threshold" type="integer" label="Gene fraction threshold"
25 value="0" min="0" max="100" />
23 </inputs> 26 </inputs>
24 <outputs> 27 <outputs>
25 <data name="gene" format="tabular" /> 28 <data name="gene" format="tabular" />
26 <data name="mech" format="tabular" /> 29 <data name="mech" format="tabular" />
27 <data name="class" format="tabular" /> 30 <data name="class" format="tabular" />