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comparison ngs-tools_merge_fna_qual.xml @ 0:1a56bef47dcf draft

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First tool_shed release. Using ngs-tools version 0.1.6.
author cjav
date Thu, 19 Sep 2013 18:29:31 -0400
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-1:000000000000 0:1a56bef47dcf
1 <tool id="ngs-tools_merge_fna_qual" name="454's FNA/QUAL Merger (ngs-tools)" version="1.0.1">
2 <description></description>
3 <requirements>
4 <requirement type="package" version="0.1.6">ngs-tools</requirement>
5 </requirements>
6 <command>
7 ngs-tools merge-fna-qual --output $output_file $fasta_file $qual_file
8 </command>
9 <inputs>
10 <param name="fasta_file" type="data" format="fasta" label="FASTA File" />
11 <param name="qual_file" type="data" format="qual454" label="Quality Score File" />
12 </inputs>
13 <outputs>
14 <data name="output_file" format="fastqsanger" />
15 </outputs>
16 <help>
17
18 **What it does**
19
20 This tool joins a FASTA file to a Quality Score file, creating a single FASTQ block for each read.
21
22 Use this tool to convert 454-type output to FASTQ.
23
24 --------
25
26 This tool is based on `ngs-tools`__ by Carlos Borroto &lt;carlos.borroto@gmail.com&gt;.
27
28 .. __: https://github.com/cjav/ngs-tools/
29
30 </help>
31 </tool>