Mercurial > repos > cjav > merge_fna_qual

<tool id="ngs-tools_merge_fna_qual" name="454's FNA/QUAL Merger (ngs-tools)" version="1.0.1">
	<description></description>
    <requirements>
        <requirement type="package" version="0.1.6">ngs-tools</requirement>
    </requirements>
    <command>
        ngs-tools merge-fna-qual --output $output_file $fasta_file $qual_file
    </command>
    <inputs>
        <param name="fasta_file" type="data" format="fasta" label="FASTA File" />
        <param name="qual_file" type="data" format="qual454" label="Quality Score File" />
    </inputs>
    <outputs>
        <data name="output_file" format="fastqsanger" />
    </outputs>
<help>

**What it does**

This tool joins a FASTA file to a Quality Score file, creating a single FASTQ block for each read.

Use this tool to convert 454-type output to FASTQ.

--------

This tool is based on `ngs-tools`__ by Carlos Borroto &lt;carlos.borroto@gmail.com&gt;.

 .. __: https://github.com/cjav/ngs-tools/

</help>
</tool>
author	cjav
date	Thu, 19 Sep 2013 18:29:31 -0400
parents
children	94ed225979f4