Mercurial > repos > cjav > merge_fna_qual
changeset 0:1a56bef47dcf draft
First tool_shed release. Using ngs-tools version 0.1.6.
| author | cjav |
|---|---|
| date | Thu, 19 Sep 2013 18:29:31 -0400 |
| parents | |
| children | 9bd311e6fc2a |
| files | ngs-tools_merge_fna_qual.xml tool_dependencies.xml |
| diffstat | 2 files changed, 37 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ngs-tools_merge_fna_qual.xml Thu Sep 19 18:29:31 2013 -0400 @@ -0,0 +1,31 @@ +<tool id="ngs-tools_merge_fna_qual" name="454's FNA/QUAL Merger (ngs-tools)" version="1.0.1"> + <description></description> + <requirements> + <requirement type="package" version="0.1.6">ngs-tools</requirement> + </requirements> + <command> + ngs-tools merge-fna-qual --output $output_file $fasta_file $qual_file + </command> + <inputs> + <param name="fasta_file" type="data" format="fasta" label="FASTA File" /> + <param name="qual_file" type="data" format="qual454" label="Quality Score File" /> + </inputs> + <outputs> + <data name="output_file" format="fastqsanger" /> + </outputs> +<help> + +**What it does** + +This tool joins a FASTA file to a Quality Score file, creating a single FASTQ block for each read. + +Use this tool to convert 454-type output to FASTQ. + +-------- + +This tool is based on `ngs-tools`__ by Carlos Borroto <carlos.borroto@gmail.com>. + + .. __: https://github.com/cjav/ngs-tools/ + +</help> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Sep 19 18:29:31 2013 -0400 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="ngs-tools" version="0.1.6"> + <repository changeset_revision="a86055b09b0a" name="package_ngs_tools_0_1_6" owner="cjav" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>