Mercurial > repos > cjav > smalt
diff tools/tool-data/smalt_index.loc.sample @ 1:54855bd8d107 draft default tip
First attempt to get tool_dependencies.xml right.
| author | cjav |
|---|---|
| date | Wed, 20 Mar 2013 17:07:14 -0400 |
| parents | 747433a6de00 |
| children |
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--- a/tools/tool-data/smalt_index.loc.sample Wed Feb 13 13:27:44 2013 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,29 +0,0 @@ -#This is a sample file distributed with Galaxy that enables tools -#to use a directory of Smalt indexed sequences data files. You will need -#to create these data files and then create a smalt_index.loc file -#similar to this one (store it in this directory) that points to -#the directories in which those files are stored. The smalt_index.loc -#file has this format (longer white space characters are TAB characters): -# -#<unique_build_id> <dbkey> <display_name> <file_path> -# -#So, for example, if you had phiX indexed stored in -#/depot/data2/galaxy/phiX/base/, -#then the smalt_index.loc entry would look like this: -# -#phiX174 phiX phiX Pretty /depot/data2/galaxy/phiX/base/phiX.fa -# -#and your /depot/data2/galaxy/phiX/base/ directory -#would contain hg19.fa.* files: -# -#-rw-r--r-- 1 cborroto universe 527388 2005-09-13 10:12 phix.fa.sma -#-rw-r--r-- 1 cborroto universe 269808 2005-09-13 10:12 phiX.fa.smi -# -#Your smalt_index.loc file should include an entry per line for each -#index set you have stored. The "file" in the path does not actually -#exist, but it is the prefix for the actual index files. For example: -# -#phiX174 phiX phiX174 /depot/data2/galaxy/phiX/base/phiX.fa -#hg18canon hg18 hg18 Canonical /depot/data2/galaxy/hg18/base/hg18canon.fa -#hg18full hg18 hg18 Full /depot/data2/galaxy/hg18/base/hg18full.fa -