Mercurial > repos > clairetn > detrprok_scripts
view detrprok_scripts/splitTranscriptGff.xml @ 0:a53eb951b164 draft
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author | clairetn |
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date | Mon, 25 Mar 2013 05:39:29 -0400 |
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<tool id="splitTranscriptGff" name="splitTranscriptGff"> <description> Define UTRs and intergenic operonic regions from a transcript file and following a reference file </description> <command interpreter="perl"> splitTranscriptGff.pl -i $referenciesFile -j $transcriptsFile > $outputFile </command> <inputs> <param name="referenciesFile" type="data" label="Referencies Input File" format="gff" /> <param name="transcriptsFile" type="data" label="Transcripts Input File" format="gff" /> </inputs> <outputs> <data format="gff3" name="outputFile" label="[splitTranscript] Output File"/> </outputs> <tests> <test> <param name="referenciesFile" value="splitTranscript_Reference.gff" /> <param name="transcriptsFile" value="splitTranscript_TranscriptionUnit.gff" /> <output name="outputFile" file="splitTranscript_Result.gff" /> </test> </tests> <help> Note that inputs files should be sorted by increasing positions and that referencies should be included in transcripts. </help> </tool>