Mercurial > repos > climate > c3s
view c3s_retrieve.py @ 1:bd153c794da1 draft
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit de74da48cc04c0cb261d07c451d00598beb834d9
author | climate |
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date | Thu, 08 Feb 2024 17:58:54 +0000 |
parents | 250554670f72 |
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import argparse import ast from os import environ, path import cdsapi parser = argparse.ArgumentParser() parser.add_argument("-i", "--request", type=str, help="input API request") parser.add_argument("-o", "--output", type=str, help="output API request") args = parser.parse_args() if path.isfile(args.request): f = open(args.request, "r") req = f.read() f.close() mapped_chars = { '>': '__gt__', '<': '__lt__', "'": '__sq__', '"': '__dq__', '[': '__ob__', ']': '__cb__', '{': '__oc__', '}': '__cc__', '@': '__at__', '#': '__pd__', "": '__cn__' } # Unsanitize labels (element_identifiers are always sanitized by Galaxy) for key, value in mapped_chars.items(): req = req.replace(value, key) print("req = ", req) c3s_type = req.split('c.retrieve')[1].split('(')[1].split(',')[0].strip(' "\'\t\r\n') c3s_req = '{' + req.split('{')[1].split('}')[0].replace('\n', '') + '}' c3s_req_dict = ast.literal_eval(c3s_req) c3s_output = req.split('}')[1].split(',')[1].split(')')[0].strip(' "\'\t\r\n') f = open(args.output, "w") f.write("dataset to retrieve: " + c3s_type + "\n") f.write("request: " + c3s_req + "\n") f.write("output filename: " + c3s_output) f.close() print("start retrieving data...") cdapi_file = path.join(environ.get('HOME'), '.cdsapirc') if path.isfile(cdapi_file): c = cdsapi.Client() c.retrieve( c3s_type, c3s_req_dict, c3s_output) print("data retrieval successful")