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comparison cdo_info.xml @ 0:8e0ae5c594e7 draft default tip

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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/cdo commit da614bb8e3e9b19a5167ff19b625a71d9976108a"
author climate
date Sat, 15 Jan 2022 23:20:26 +0000
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-1:000000000000 0:8e0ae5c594e7
1 <tool id="cdo_info" name="CDO get info" profile="20.05" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>Climate Data Information Operators to get information on Climate and NWP model data</description>
3 <macros>
4 <import>macros.xml</import>
5 <import>macros_info.xml</import>
6 </macros>
7 <expand macro="edam_ontology"/>
8 <expand macro="cdo_requirements"/>
9 <expand macro="cdo_stdio"/>
10 <command><![CDATA[
11 cdo
12 '$information.opt'
13 '$main_infile'
14 #if str($information.opt) == 'diff' or str($information.opt) == 'diffn'
15 '$information.secondary_infile'
16 #end if
17 > '$info'
18 ]]> </command>
19 <inputs>
20 <expand macro="operator_information"/>
21 </inputs>
22 <outputs>
23 <data name="info" format="txt"/>
24 </outputs>
25 <tests>
26 <test>
27 <param name="main_infile" ftype="netcdf" value="longitude.nc"/>
28 <conditional name="information">
29 <param name="opt" value="info" />
30 </conditional>
31 <output name="info" value="longitude.txt" compare="diff" lines_diff="2"/>
32 </test>
33 <test>
34 <param name="main_infile" ftype="netcdf" value="latitude.nc"/>
35 <conditional name="information">
36 <param name="diff" value="info" />
37 <param name="secondary_infile" ftype="netcdf" value="latitude_modified.nc"/>
38 </conditional>
39 <output name="info" value="latitude_diff.txt" compare="diff" lines_diff="2"/>
40 </test>
41 <test>
42 <param name="main_infile" ftype="netcdf" value="WMI_Lear.nc"/>
43 <conditional name="information">
44 <param name="opt" value="showdate" />
45 </conditional>
46 <output name="info" value="WMI_Lear_showdate.txt" compare="diff" lines_diff="2"/>
47 </test>
48 <test>
49 <param name="main_infile" ftype="netcdf" value="WMI_Lear.nc"/>
50 <conditional name="information">
51 <param name="opt" value="griddes" />
52 </conditional>
53 <output name="info" value="WMI_Lear_griddes.txt" compare="diff" lines_diff="2"/>
54 </test>
55 <test>
56 <param name="main_infile" ftype="netcdf" value="WMI_Lear.nc"/>
57 <conditional name="information">
58 <param name="opt" value="showname" />
59 </conditional>
60 <output name="info" value="WMI_Lear_names.txt" compare="diff" lines_diff="2"/>
61 </test>
62 </tests>
63 <help><![CDATA[
64
65 **CDO Climate Data Information Operators**
66 =======================================================================================================
67
68 This tool is a wrapper to the Climate Data Operators (CDO) for all Information Operators.
69
70 - CDO Information operators return information about the input file(s). Output is written in a text file.
71 - CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.
72 - There are more than 600 operators available.
73
74 - `CDO online documentation <https://code.mpimet.mpg.de/projects/cdo/>`_.
75
76 ]]> </help>
77 <expand macro="citations"/>
78 </tool>