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comparison essential_climate_variables.xml @ 5:ee42b7a33dc7 draft default tip

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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 9a008dba390aef21d4ab61240641bf455f5bb036"
author climate
date Tue, 08 Jun 2021 08:58:04 +0000
parents b261160f10ee
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4:9ee8db6ffba3 5:ee42b7a33dc7
1 <tool id="cds_essential_variability" name="Copernicus Essential Climate Variables" version="0.1.4"> 1 <tool id="cds_essential_variability" name="Copernicus Essential Climate Variables" version="0.2.0" profile="20.05">
2 <description>for assessing climate variability</description> 2 <description>for assessing climate variability</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3">python</requirement> 4 <requirement type="package" version="3">python</requirement>
5 <requirement type="package" version="0.1.4">cdsapi</requirement> 5 <requirement type="package" version="0.5.1">cdsapi</requirement>
6 <requirement type="package" version="1.9.6">cdo</requirement> 6 <requirement type="package" version="1.9.10">cdo</requirement>
7 </requirements> 7 </requirements>
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 HOME=`pwd` && 9 export HOME=`pwd` &&
10 cp \$COPERNICUS_CDSAPIRC_KEY_FILE .cdsapirc | true && 10 #set $cdsapirc_file = os.environ.get('COPERNICUS_CDSAPIRC_KEY_FILE', '')
11 #if os.path.isfile(str($cdsapirc_file))
12 echo "xx $cdsapirc_file xx" &&
13 cp $cdsapirc_file .cdsapirc &&
14 #else
15 echo 'use tool cdsapirc file' &&
16 cp '$__tool_directory__/cdsapirc.cfg' .cdsapirc &&
17 #end if
11 python3 '$__tool_directory__/ecv_retrieve.py' 18 python3 '$__tool_directory__/ecv_retrieve.py'
12 'ecv-for-climate-change' '$variable' 19 'ecv-for-climate-change' '$variable'
13 --month '$month' 20 --month '$month'
14 #if str($product_type.product) == 'monthly_mean' 21 #if str($product_type.product) == 'monthly_mean'
15 --year '$product_type.year' 22 --year '$product_type.year'
16 --time_aggregation '1_month' 23 --time_aggregation '1_month_mean'
17 #else if str($product_type.product) == 'anomaly' 24 #else if str($product_type.product) == 'anomaly'
25 --climate_reference_period $product_type.climate_reference_period
18 --time_aggregation '$product_type.selector' 26 --time_aggregation '$product_type.selector'
19 --year '$product_type.year' 27 --year '$product_type.year'
20 #else 28 #else
21 --year '2018' 29 --climate_reference_period $product_type.climate_reference_period
22 --time_aggregation '1_month' 30 --time_aggregation '1_month_mean'
23 #end if 31 #end if
24 --product_type '$product_type.product' 32 --product_type '$product_type.product'
25 --format 'tgz' --output 'tmp.tgz' 33 --format 'tgz' --output 'tmp.tgz'
26 --verbose && 34 --verbose &&
27 tar zxvf tmp.tgz && 35 tar zxvf tmp.tgz &&
41 <param name="product" type="select" label="Select type of data"> 49 <param name="product" type="select" label="Select type of data">
42 <option value="monthly_mean" selected="true">Monthly mean</option> 50 <option value="monthly_mean" selected="true">Monthly mean</option>
43 <option value="climatology">Climatology</option> 51 <option value="climatology">Climatology</option>
44 <option value="anomaly">Anomaly</option> 52 <option value="anomaly">Anomaly</option>
45 </param> 53 </param>
54 <when value="climatology">
55 <param name="climate_reference_period" type="select" multiple="false" label="Select Climate reference period">
56 <option value="1981_2010" selected="true">1981-2010</option>
57 <option value="1991_2020">1991-2020</option>
58 </param>
59 </when>
46 <when value="monthly_mean"> 60 <when value="monthly_mean">
47 <param name="year" type="select" multiple="true" label="Select year(s)"> 61 <param name="year" type="select" multiple="true" label="Select year(s)">
48 <option value="1979">1979</option> 62 <option value="1979">1979</option>
49 <option value="1980">1980</option> 63 <option value="1980">1980</option>
50 <option value="1981">1981</option> 64 <option value="1981">1981</option>
83 <option value="2014">2014</option> 97 <option value="2014">2014</option>
84 <option value="2015">2015</option> 98 <option value="2015">2015</option>
85 <option value="2016">2016</option> 99 <option value="2016">2016</option>
86 <option value="2017">2017</option> 100 <option value="2017">2017</option>
87 <option value="2018">2018</option> 101 <option value="2018">2018</option>
88 <option value="2019" selected="true">2019</option> 102 <option value="2019">2019</option>
103 <option value="2020" selected="true">2020</option>
89 </param> 104 </param>
90 </when> 105 </when>
91 <when value="anomaly"> 106 <when value="anomaly">
107 <param name="climate_reference_period" type="select" multiple="false" label="Select Climate reference period">
108 <option value="1981_2010" selected="true">1981-2010</option>
109 <option value="1991_2020">1991-2020</option>
110 </param>
92 <param name="year" type="select" multiple="true" label="Select year(s)"> 111 <param name="year" type="select" multiple="true" label="Select year(s)">
93 <option value="1979">1979</option> 112 <option value="1979">1979</option>
94 <option value="1980">1980</option> 113 <option value="1980">1980</option>
95 <option value="1981">1981</option> 114 <option value="1981">1981</option>
96 <option value="1982">1982</option> 115 <option value="1982">1982</option>
127 <option value="2013">2013</option> 146 <option value="2013">2013</option>
128 <option value="2014">2014</option> 147 <option value="2014">2014</option>
129 <option value="2015">2015</option> 148 <option value="2015">2015</option>
130 <option value="2016">2016</option> 149 <option value="2016">2016</option>
131 <option value="2017">2017</option> 150 <option value="2017">2017</option>
132 <option value="2018" selected="true">2018</option> 151 <option value="2018">2018</option>
152 <option value="2019">2019</option>
153 <option value="2020" selected="true">2020</option>
133 </param> 154 </param>
134 <param name="selector" type="select" label="Time aggregation"> 155 <param name="selector" type="select" label="Time aggregation">
135 <option value="12_month" selected="true">yearly</option> 156 <option value="12_month_running_mean" selected="true">yearly</option>
136 <option value="1_month">monthly</option> 157 <option value="1_month_mean">monthly</option>
137 </param> 158 </param>
138 </when> 159 </when>
139 </conditional> 160 </conditional>
140 <param name="month" type="select" multiple="true" label="Select month(s)"> 161 <param name="month" type="select" multiple="true" label="Select month(s)">
141 <option value="01" selected="true">January</option> 162 <option value="01" selected="true">January</option>
203 and other known deficiencies. Data sources and adjustment methods used are described in the Product User 224 and other known deficiencies. Data sources and adjustment methods used are described in the Product User
204 Guide, as are various particulars such as the baseline periods used to calculate monthly climatologies and 225 Guide, as are various particulars such as the baseline periods used to calculate monthly climatologies and
205 the corresponding anomalies. 226 the corresponding anomalies.
206 227
207 228
208 - ECV Factsheets: https://gcos.wmo.int/en/essential-climate-variables/ecv-factsheets 229 - ECV: https://gcos.wmo.int/en/essential-climate-variables
209 - Copernicus Climate Data Store documentation on Essential Climate Variables: 230 - Copernicus Climate Data Store documentation on Essential Climate Variables:
210 https://cds.climate.copernicus.eu/cdsapp#!/dataset/ecv-for-climate-change?tab=overview 231 https://cds.climate.copernicus.eu/cdsapp#!/dataset/ecv-for-climate-change?tab=overview
211 232
212 See climatedata.wmo.int/ for more information on Essential Climate Variables. 233 See climatedata.wmo.int/ for more information on Essential Climate Variables.
213 234
227 ]]></help> 248 ]]></help>
228 <citations> 249 <citations>
229 <citation type="doi">10.1002/qj.828</citation> 250 <citation type="doi">10.1002/qj.828</citation>
230 <citation type="doi">10.1002/qj.2949</citation> 251 <citation type="doi">10.1002/qj.2949</citation>
231 </citations> 252 </citations>
253 <edam_topics>
254 <edam_topic>topic_3855</edam_topic>
255 <edam_topic>topic_3318</edam_topic>
256 </edam_topics>
257 <edam_operations>
258 <edam_operation>operation_2422</edam_operation>
259 <edam_operation>operation_3357</edam_operation>
260 <edam_operation>operation_0335</edam_operation>
261 </edam_operations>
232 </tool> 262 </tool>